The Leading Source for Global News and Information Covering the Ecosystem of High Productivity Computing
October 06, 2006
Oak Ridge National Laboratory's (ORNL's) Cray XT3 supercomputer, known as Jaguar, has become the fastest system in the world for running the Princeton Plasma Physics Laboratory's (PPPL's) flagship code for studying plasma microturbulence in fusion reactors.
PPPL's Stephane Ethier recently succeeded in running the Gyrokinetic Toroidal Code (GTC) on 10,386 of Jaguar's 10,424 processing cores, advancing 5.4 billion particles per step per second. That performance is a 13 percent improvement over the previous record of 4.8 billion particles per step per second set on Japan's Earth Simulator.
Ethier noted that GTC is one of only a few U.S. codes that have been benchmarked on the Earth Simulator. The Earth Simulator benchmark used up to 4096 processors.
Ethier said he is especially pleased with the efficiency at which the code was able to run on Jaguar's dual-core processors. "With regard to the increasing current emphasis on multi-core architectures," he said, "GTC has demonstrated better than 95 percent efficiency on the second processor of each dual-code node in these runs."
The Princeton researcher noted that the effort received substantial collaboration from staff at ORNL's National Center for Computational Sciences (NCCS).
"PPPL is most grateful to the staff of NCCS and especially to Scott Klasky and Don Maxwell for their extraordinary supporting efforts, which helped enable the timely achievement of these highly productive runs," Ethier said.
The milestone puts scientists a step closer to accurately simulating plasma behavior in fusion reactors such as the proposed ITER reactor, currently a top priority of the U.S. Department of Energy's Office of Science. The ITER project is geared toward reaching the fusion energy break-even point, getting more energy out of the reactor than goes into it.
PPPL chief scientist Williams Tang said the run on Jaguar was able to reach an extremely high statistical resolution, noting that the field of fusion simulation will continue to benefit as petascale computing systems become available.
"The ability to carry out such high-resolution calculations with associated very low noise levels enables better physics understanding of turbulent plasma behavior on realistic time scales characteristic of actual experimental observations," he said. "It holds great promise for accelerating the pace of greater scientific discovery at the petascale range and beyond."
Turbulence is believed to be the primary mechanism by which particles and energy leave the confining magnetic field of a doughnut-shaped fusion system, leading to a loss of energy in the system. According to Tang, the process of designing and operating a reactor such as ITER must take this phenomenon into account. GTC is a three-dimensional code developed to study the dynamics of turbulence and associated transport driven by variations of temperature and density within the system.
-----
Source: Oak Ridge National Laboratory
Appro Xtreme-X1 Supercomputer is Intel® Cluster Ready Certified
Appro adopts the Intel Cluster Ready program to help simplify deployment, usage and management of high performance computing clusters to achieve faster and more accurate time-to-results. Learn how.
UPenn adds third state to nanowire storage; and UIUC is named the first CUDA Center of Excellence. John West recaps those stories and more in our weekly wrap-up.
Read More...
Modern civilization is positively drenched in data, some of which needs to be dealt with in real time to be of any value. Businesses, especially in the financial industry, have long recognized this, and have been building custom systems to collect, analyze, and react to information as it is captured. IBM thinks the time is right to generalize these approaches into a new field of computing -- and a new business -- it calls stream computing.
Read More...
Not all supercomputing rides on InfiniBand or proprietary interconnects. For technical applications that decompose neatly into loosely-coupled threads, a big cluster with vanilla Gigabit Ethernet does just fine. The top Ethernet system on the TOP500 list -- at number 58 -- is the new ATLAS cluster at the Max Planck Institute for Gravitational Physics in Germany.
Read More...
Jul 03 | Byte and Switch | The San Diego Supercomputer Center, which provides much of the core storage for the TeraGrid, is overhauling its 28 petabyte storage system to support tremendous data growth. Read more...
Jul 03 | ExtremeTech | Intel exec Pat Gelsinger said he sees the Intel Architecture permeating virtually every segment of computing, as the company's microprocessors expand into more and more cores. Read more...
Jul 03 | Bangkok Post | The latest programmable GPUs are starting to steal application cycles from CPUs. Read more...
Jul 02 | UC San Diego News Center | With the help of resources at the San Diego Supercomputer Center, UCSD scientists have isolated more than two dozen promising compounds from which new “designer drugs” might be developed to combat the avian flu virus. Read more...
Jul 02 | Chip Design Magazine | Dual- and quad-core processors barely scratch the surface of the potential of multi-core systems. Read more...
Jul 03 | | The paper explores some of the performance benefits of Star-P on commodity scalable systems such as IBM's Linux clusters based on multi-core Intel Xeon processors. The results demonstrate substantial performance gains with almost no programmer effort-roughly a 24-fold speed improvement for solving linear matrix equations. An overview of parallel computing with Star-P, a description of the performance test cases and description of IBM cluster configurations used for testing are also addressed.
Apr 17 | | An N-body simulation numerically approximates the evolution of a system of bodies in which each body continuously interacts with every other body, and it arises in many other computational science problems as well.
Jun 05 | | As pressure increases on the upstream seismic processing community to deliver ever-higher levels of productivity and efficiency, a new generation of storage solutions will be required that allow the maximum utilisation of high-performance computing (HPC) Linux cluster resources, together with the minimum of management overhead.
Today, HPC organizations are requiring substantially more floating point performance to solve real-world problems. In this podcast, Ben Bennett, ClearSpeed General Manager, discusses how acceleration technology can improve the overall performance of standard x86-based systems...
Get updates and insights on the High Productivity Computing industry delivered driectly to your inbox.