December 14, 2009
Health officials evaluate modeling tool to simulate various pandemic strategies
RICHLAND, Wash., Dec. 14 -- As communities brace for rising wintertime influenza cases, scientists are developing a mathematical and visual analytic toolkit to help health officials quickly analyze pandemics and craft better response strategies.

Scientists at the Department of Energy's Pacific Northwest National Laboratory (PNNL) have created a Pandemic Influenza Planning Tool to model the spread of a disease through various age groups and geographic populations. It also allows decision-makers to carefully assess the benefit of their decisions for different scenarios in advance.
"No single approach provides an optimal strategy when battling the spread of a pandemic," said Robert Brigantic, PNNL operations research scientist, "But, the use of this tool can allow health officials to more accurately predict how a disease might evolve when various mitigation strategies are applied."
These results could be valuable in developing an aggressive preventive strategy and deciding how best to use limited resources.
Brigantic's tool allows officials to easily evaluate potential response options by manipulating modeling parameters and running different simulations. For instance, officials could assess closing schools to decrease disease spread, initiate preventative media campaigns, or evaluate distributing antiviral medications to easily evaluate potential mitigation approaches.
In late September, PNNL demonstrated an early prototype of the tool during a Walla Walla County, Wash., Pandemic Influenza emergency exercise. Officials simulated an H1N1 Swine Flu outbreak and used the tool to predict resource needs and shortfalls, such as the loss of critical staff and lack of hospital beds.
"The tool illustrated how essential services can fail when critical employees became ill," said Gay Ernst, director of emergency management in Walla Walla County. "Visualizing possible disease progression enables us to consider how many critical personnel may be unavailable at one time and plan accordingly."
To help users also understand and visualize the effects of potential scenarios, PNNL teamed with Purdue University to add a visual analytic element to the toolkit called PanViz. It allows decision makers to visually track a simulation of spreading influenza on a video monitor. Users can toggle on and off various decision measures and visually see and examine the impact of those modifications and how they may alter the spread of the outbreak over time across counties in a state.
PNNL has demonstrated the planning tool during its development to Washington State Public Health as well as emergency officials in Los Angeles County and in Indiana. Researchers are improving the system's infectious disease modeling capabilities by making underlying algorithms more sophisticated and precise. Including more mitigation strategies and incorporating input from public health and emergency management experts is a priority as developers enhance the model.
This work was originally developed under a $50,000 subcontract with Purdue University to create the Pandemic Influenza Planning Tool for use by Indiana state as part of its pandemic influenza planning exercises. If additional funding is secured, Brigantic hopes to expand the model capabilities to see how additional social-distancing actions, such as telecommuting, cancelling social events and imposing quarantines might influence the virtual spread of a pandemic. He also envisions incorporating additional social modeling and behavioral responses.
Brigantic and his team are also conducting related modeling and simulation analysis for the Centers for Disease Control and Prevention to establish effective and efficient screening of passengers arriving on international flights for pandemic influenza.
About Pacific Northwest National Laboratory
Pacific Northwest National Laboratory is a Department of Energy Office of Science national laboratory where interdisciplinary teams advance science and technology and deliver solutions to America's most intractable problems in energy, national security and the environment. PNNL employs 4,650 staff, has a $918 million annual budget, and has been managed by Ohio-based Battelle since the lab's inception in 1965. Follow PNNL on Facebook, Linked In and Twitter.
-----
Source: Pacific Northwest National Laboratory
The Xeon Phi coprocessor might be the new kid on the high performance block, but out of all first-rate kickers of the Intel tires, the Texas Advanced Computing Center (TACC) got the first real jab with its new top ten Stampede system.We talk with the center's Karl Schultz about the challenges of programming for Phi--but more specifically, the optimization...
Read more...
Although Horst Simon was named Deputy Director of Lawrence Berkeley National Laboratory, he maintains his strong ties to the scientific computing community as an editor of the TOP500 list and as an invited speaker at conferences.
Read more...
Supercomputing veteran, Bo Ewald, has been neck-deep in bleeding edge system development since his twelve-year stint at Cray Research back in the mid-1980s, which was followed by his tenure at large organizations like SGI and startups, including Scale Eight Corporation and Linux Networx. He has put his weight behind quantum company....
Read more...
May 16, 2013 |
When it comes to cloud, long distances mean unacceptably high latencies. Researchers from the University of Bonn in Germany examined those latency issues of doing CFD modeling in the cloud by utilizing a common CFD and its utilization in HPC instance types including both CPU and GPU cores of Amazon EC2.
Read more...
May 15, 2013 |
Supercomputers at the Department of Energy’s National Energy Research Scientific Computing Center (NERSC) have worked on important computational problems such as collapse of the atomic state, the optimization of chemical catalysts, and now modeling popping bubbles.
Read more...
May 10, 2013 |
Program provides cash awards up to $10,000 for the best open-source end-user applications deployed on 100G network.
Read more...
May 09, 2013 |
The Japanese government has revealed its plans to best its previous K Computer efforts with what they hope will be the first exascale system...
Read more...
May 08, 2013 |
For engineers looking to leverage high-performance computing, the accessibility of a cloud-based approach is a powerful draw, but there are costs that may not be readily apparent.
Read more...
05/10/2013 | Cleversafe, Cray, DDN, NetApp, & Panasas | From Wall Street to Hollywood, drug discovery to homeland security, companies and organizations of all sizes and stripes are coming face to face with the challenges – and opportunities – afforded by Big Data. Before anyone can utilize these extraordinary data repositories, however, they must first harness and manage their data stores, and do so utilizing technologies that underscore affordability, security, and scalability.
04/15/2013 | Bull | “50% of HPC users say their largest jobs scale to 120 cores or less.” How about yours? Are your codes ready to take advantage of today’s and tomorrow’s ultra-parallel HPC systems? Download this White Paper by Analysts Intersect360 Research to see what Bull and Intel’s Center for Excellence in Parallel Programming can do for your codes.
In this demonstration of SGI DMF ZeroWatt disk solution, Dr. Eng Lim Goh, SGI CTO, discusses a function of SGI DMF software to reduce costs and power consumption in an exascale (Big Data) storage datacenter.
The Cray CS300-AC cluster supercomputer offers energy efficient, air-cooled design based on modular, industry-standard platforms featuring the latest processor and network technologies and a wide range of datacenter cooling requirements.