CSCS Top Right Frontpage
HPCwire

Since 1986 - Covering the Fastest Computers
in the World and the People Who Run Them

Language Flags

Visit additional Tabor Communication Publications

Datanami
Digital Manufacturing Report
HPC in the Cloud
Green Computing Report

Tabor Communications
Corporate Video

HPC Center Traces Storage Selection Experience


We often hear about national labs and universities settling on a particular vendor for server and storage solutions, but details are usually in short supply when it comes to how vendors stacked up against one another in a head-to-head bidding war.

HP announced last week that the University of Utah's Center for High Performance Computing (CHPC) moved into its Converged Infrastructure arena by selecting the HP X9320 IBRIX Network Storage System coupled with ProLiant SL160z G6 servers. This announcement, like many others of this ilk was full of the expected hyperbole about scalability and cost, so we followed up with the Brian Haymore, who heads the HPC storage team at CHPC to find out how they evaluated the competing vendors to enhance the center's Updraft cluster and what ultimately led to their storage decision.

The I/O issue isn't new for Haymore's team. He says that this pain point was one they recognized early on but that came into more focus when they would have one or two users running large cases on the clusters, then having everyone else wanting to go to the scratch file system to look at the results they'd run weeks or months ago. He said that at this point the file system would be dead in the water--quite a problem when their people expected interactive responsiveness. He claims they knew the applications were saturating everything the current file system could offer and that it wasn’t a network saturation issue. He remained convinced that NFS just wouldn't offer the scalability for some applications and that proprietary solutions might offer the only remedy.

The chemical and fuels engineering group at CHPC was running an application that was authored by the Center for the Simulation of Accidental Fires and Explosions. This application is a composite of code contributed from scientists across the country, which fine-tunes its results but is difficult to modify from an I/O perspective. This meant that for Haymore’s team, the storage selection process required more than just looking at price points—they needed a file system that was going to fit with the application without manipulating application itself.

With that in mind, the I/O difficulties were at the heart of performance hitches. During the baseline test, which was against their standard NFS server they were running at about 90 seconds per iteration with about 45 percent of that time being gobbled by I/O. In other words, half of the time that baseline system over the standard NFS server was spent in I/O activity.

Four vendors were vying for a chance to improve the I/O capabilities at CHPC, including Panasas, HP with its IBRIX solution, partners Dell and Terascala with their Lustre offering, and the partnership to provide GPFS from IBM and DDN. Haymore told us that while these were the four main vendors considered, others, including Isilon were evaluated early on. Isilon's solution would only have been suitable if the application could be changed, which was not a possibility.

Haymore says that Panasas provided no performance increase with their application. His team wanted to dig deeper with the Panasas engineering team to look for the choke point but they were unable to gain any traction with that process. Eventually, he says, this option timed out and they considered other alternatives.

While they were able to realize a tripling in performance with the Dell and Terascala Lustre offering, the excitement over the performance increase was hampered by a troubling series of mysterious I/O errors that affected 50 percent of the runs, even those that used the exact same dataset. As Haymore described, there seemed to be no rhyme or reason—the “file system just puked.”

He says that they found good support from the Dell Terascala team but ultimately they were never able to resolve the error after determining it was not a tuning error and instead was likely a bug that had been filed with the Lustre package that could not be fixed in a reasonable timeframe. Besides, as Haymore noted, aside from these more practical concerns about stability, the very status of the Lustre file system was in question as it was being handed off to Oracle.

In the end, the choice boiled down to the DDN/IBM GPFS and HP’s IBRIX solutions as they both performed almost exactly the same. He says that in this case, the tipping point wasn’t based on pricing alone—rather, he said, the support model was a major factor. As Haymore pointed out, getting your hardware from DDN and software from IBM required two hops for support whereas with HP, it was a single, unified support model—an important factor in his team’s final decision.

Make no mistake, however, price did play a role. While he admits that even at the beginning he expected the HP solution to be quite expensive, he says that they were able to accommodate their budget—the icing on the cake, as far as Haymore was concerned.

On that note, we asked if he went into the closed bidding process thinking that one solution would win out. He says that he would have counted on Lustre as being the champion if he had to make an early pre-benchmarking guess. This is because, as he put it, “Part of us doing our jobs is to keep our finger on the pulse of what the big boys are doing and for us, those big boys are the national labs. Lustre is heavily deployed there but it’s hard to tell if it’s because that’s what won the bid on a price point or if it was really the king of performance….We don’t know why it is always selected. We just figured we’d mimic national labs since it’s been their trend for the last several years.” While he notes that they do use other file systems, he says he’s still surprised at the errors they faced with Lustre.

Sponsored Links

Accelerate your science with Seneca
One of the first HPC providers installing a 4X NVIDIA Kepler K-20 cluster. Invites you to a free evaluation on Seneca’s NVIDIA K20 Kepler cluster, pre-loaded with AMBER, NAMD, LAMMPS

Webinar: Programming Heterogeneous X64+GPU Systems Using OpenACC
Join Michael Wolfe as he compares the advantages and costs of using both low-level models and the directive-based OpenACC model for programming accelerated heterogeneous systems. Registration is free.

High-Performance Computing in Action
Businesses that want to be on the cutting edge of their industries are increasingly turning to high-performance computing (HPC) solutions to handle complex compute processes and speed up their rate of innovation. Download this Executive Brief to see how businesses in energy, life sciences and entertainment put HPC solutions to work in their operations.

May 22, 2013

May 21, 2013

May 20, 2013

May 17, 2013

May 16, 2013

May 15, 2013

May 14, 2013

May 13, 2013

May 10, 2013

May 09, 2013


Most Read Features

Most Read Around the Web

Most Read This Just In


Short Takes

Building Supercomputers with Raspberries

May 22, 2013 | At some point in the not-too-distant future, building powerful, miniature computing systems will be considered a hobby for high schoolers, just as robotics or even Lego-building are today. That could be made possible through recent advancements made with the Raspberry Pi computers.
Read more...

Running Computational Fluid Dynamics in the Cloud

May 16, 2013 | When it comes to cloud, long distances mean unacceptably high latencies. Researchers from the University of Bonn in Germany examined those latency issues of doing CFD modeling in the cloud by utilizing a common CFD and its utilization in HPC instance types including both CPU and GPU cores of Amazon EC2.
Read more...

Computing the Physics of Bubbles

May 15, 2013 | Supercomputers at the Department of Energy’s National Energy Research Scientific Computing Center (NERSC) have worked on important computational problems such as collapse of the atomic state, the optimization of chemical catalysts, and now modeling popping bubbles.
Read more...

Internet2 Awards Program Seeks Innovative Applications

May 10, 2013 | Program provides cash awards up to $10,000 for the best open-source end-user applications deployed on 100G network.
Read more...

Floating Funding to Exascale Island

May 09, 2013 | The Japanese government has revealed its plans to best its previous K Computer efforts with what they hope will be the first exascale system...
Read more...

Sponsored Whitepapers

Best Practices in Big Data Storage

05/10/2013 | Cleversafe, Cray, DDN, NetApp, & Panasas | From Wall Street to Hollywood, drug discovery to homeland security, companies and organizations of all sizes and stripes are coming face to face with the challenges – and opportunities – afforded by Big Data. Before anyone can utilize these extraordinary data repositories, however, they must first harness and manage their data stores, and do so utilizing technologies that underscore affordability, security, and scalability.

Progress in Parallel: the Bull Parallel Programming Center

04/15/2013 | Bull | “50% of HPC users say their largest jobs scale to 120 cores or less.” How about yours? Are your codes ready to take advantage of today’s and tomorrow’s ultra-parallel HPC systems? Download this White Paper by Analysts Intersect360 Research to see what Bull and Intel’s Center for Excellence in Parallel Programming can do for your codes.

Sponsored Multimedia

SGI DMF ZeroWatt Disk Solution

In this demonstration of SGI DMF ZeroWatt disk solution, Dr. Eng Lim Goh, SGI CTO, discusses a function of SGI DMF software to reduce costs and power consumption in an exascale (Big Data) storage datacenter.

Cray CS300-AC Cluster Supercomputer Air Cooling Technology Video

The Cray CS300-AC cluster supercomputer offers energy efficient, air-cooled design based on modular, industry-standard platforms featuring the latest processor and network technologies and a wide range of datacenter cooling requirements.

SC12 Editorial Feature HPCwire Soundbite sponsored by ISC

HPC Job Bank


Featured Events


  • June 16, 2013 - June 20, 2013
    ISC'13
    Leipzig,
    Germany

  • June 17, 2013 - June 18, 2013
    Forecast 2013
    San Francisco, CA
    United States





HPCwire Events