January 24, 2012
ST. LOUIS, Jan. 24 -- Appistry, Inc., the world's best company at solving complex, data intensive problems, today announced a strategic partnership with the University of Missouri to further enhance the school's innovative genomic research. Through the partnership, the University of Missouri will deploy Ayrris/BIO, Appistry's high-performance pipeline automation technology, to accelerate their Next Generation Sequencing and bioinformatics capabilities. In addition, the collaborative program supports the advancement of bioinformatics, genetic pipelines and applied high performance computing, signifying the commitment of both organizations to fostering increased regional collaboration across the Midwest.
Through the UM Bioinformatics Consortium, a resource for high-performance computational infrastructure geared toward facilitating inter-campus communication and bioinformatics research collaborations, the University of Missouri has emerged as the Midwest's leading innovator in genomic research and data analysis. While the university's agricultural genomics research continues to generate insightful returns, with computational data storage nearing capacity, the deployment of a data life cycle management system emerged as a necessity. Appistry's Computational Storage technology will eliminate data bottlenecks and manage workloads while enabling downstream bioinformatics at scale.
As part of the partnership, Appistry's technologies will enable the University of Missouri to construct, manage and execute high throughput computing techniques to develop new pipelines for accurate, cost-effective and high quality genomic data analysis. The University of Missouri will deploy the Ayrris/BIO high-performance computing platform to increase the computational scale of their automated sequencing pipelines and alleviate their data management burden. The initial research projects using the appliance will be centered on plant and animal genomics work that is ongoing at the MU campus.
"We are really excited about the opportunities that this partnership with Appistry brings to the University," commented Gordon Springer, Ph.D., Department of Computer Science and Scientific Director, University of Missouri Bioinformatics Consortium. "Our ability to quickly and efficiently carry out the early and secondary analysis of sequence data to answer important questions about plant, animal and human genomics problems with new state of the art technologies is like the opening of a new bridge on the path to discovery. Where we end up is unknown, but that's what makes it so exciting; to be able to discover new things about ourselves and nature."
"The opportunity to partner with our state's most influential research and academic organization is not only thrilling--it's a critical development for the advancement of bioinformatics and next generation sequencing," said Kevin Haar, CEO of Appistry. "Regional collaborations like this are necessary to accelerate innovation in life sciences and to complete the life cycle of genomic research and analysis in order to support the advancement of personalized medicine and other medical breakthroughs."
About Appistry
Appistry is the world's best company at solving the world's most challenging, data intensive problems. For researchers in life sciences, Appistry's Omics pipeline service generates the most cost-effective and highest quality results for the analysis of next generation sequencing data. For a wide-range of industries, Appistry solutions enable our customers and partners to transform complex analytics pipelines into actionable intelligence. Appistry's platform supports data-intensive applications for some of the world's leading life sciences research institutions including Stanford University School of Medicine, The University of California-Davis, CHOP -- Children's Hospital of Philadelphia, The Jackson Laboratory, The University of Colorado-Boulder and Emory Winship Cancer Institute. Appistry's extended customer list includes FedEx, State Street, Tygart, Next Century and Northrop Grumman. Founded in 2001 and privately held, Appistry is headquartered in St Louis. For more information, please visit www.appistry.com and follow us on Twitter (@appistry).
-----
Source: Appistry, Inc.
Large-scale, worldwide scientific initiatives rely on some cloud-based system to both coordinate efforts and manage computational efforts at peak times that cannot be contained within the combined in-house HPC resources. Last week at Google I/O, Brookhaven National Lab’s Sergey Panitkin discussed the role of the Google Compute Engine in providing computational support to ATLAS, a detector of high-energy particles at the Large Hadron Collider (LHC).
Read more...
The Xeon Phi coprocessor might be the new kid on the high performance block, but out of all first-rate kickers of the Intel tires, the Texas Advanced Computing Center (TACC) got the first real jab with its new top ten Stampede system.We talk with the center's Karl Schultz about the challenges of programming for Phi--but more specifically, the optimization...
Read more...
Although Horst Simon was named Deputy Director of Lawrence Berkeley National Laboratory, he maintains his strong ties to the scientific computing community as an editor of the TOP500 list and as an invited speaker at conferences.
Read more...
May 16, 2013 |
When it comes to cloud, long distances mean unacceptably high latencies. Researchers from the University of Bonn in Germany examined those latency issues of doing CFD modeling in the cloud by utilizing a common CFD and its utilization in HPC instance types including both CPU and GPU cores of Amazon EC2.
Read more...
May 15, 2013 |
Supercomputers at the Department of Energy’s National Energy Research Scientific Computing Center (NERSC) have worked on important computational problems such as collapse of the atomic state, the optimization of chemical catalysts, and now modeling popping bubbles.
Read more...
May 10, 2013 |
Program provides cash awards up to $10,000 for the best open-source end-user applications deployed on 100G network.
Read more...
May 09, 2013 |
The Japanese government has revealed its plans to best its previous K Computer efforts with what they hope will be the first exascale system...
Read more...
05/10/2013 | Cleversafe, Cray, DDN, NetApp, & Panasas | From Wall Street to Hollywood, drug discovery to homeland security, companies and organizations of all sizes and stripes are coming face to face with the challenges – and opportunities – afforded by Big Data. Before anyone can utilize these extraordinary data repositories, however, they must first harness and manage their data stores, and do so utilizing technologies that underscore affordability, security, and scalability.
04/15/2013 | Bull | “50% of HPC users say their largest jobs scale to 120 cores or less.” How about yours? Are your codes ready to take advantage of today’s and tomorrow’s ultra-parallel HPC systems? Download this White Paper by Analysts Intersect360 Research to see what Bull and Intel’s Center for Excellence in Parallel Programming can do for your codes.
In this demonstration of SGI DMF ZeroWatt disk solution, Dr. Eng Lim Goh, SGI CTO, discusses a function of SGI DMF software to reduce costs and power consumption in an exascale (Big Data) storage datacenter.
The Cray CS300-AC cluster supercomputer offers energy efficient, air-cooled design based on modular, industry-standard platforms featuring the latest processor and network technologies and a wide range of datacenter cooling requirements.