Aspen
NCSA
HPCwire

Since 1986 - Covering the Fastest Computers
in the World and the People Who Run Them

Language Flags

Visit additional Tabor Communication Publications

Datanami
Digital Manufacturing Report
HPC in the Cloud
Green Computing Report

Tabor Communications
Corporate Video

New Kepler GPU Greases the Wheels for MPI Applications


As we get closer to the launch of NVIDIA's K20 GPU later this year, the company is continuing to sharpen its storyline around the new product. The K20 is the Kepler-generation processor aimed squarely at the supercomputing space and, unlike the K10, incorporates all the bells and whistles for that high-end user base. One of the features the company has talked about at some length is Hyper-Q , and in a recent blog post by Nvidian Peter Messmer, he makes a more specific pitch about how the technology is going to boost the performance and programmability these new devices.

In a nutshell, Hyper-Q is designed to support MPI applications a lot more effectively than in NVIDIA's Fermi-generation GPUs. In the current architecture, there is only a single work queue to field MPI processes from the host processor. Since the host driver is invariably a multicore x86 chip, there are potentially as many MPI processes in flight as there are cores on the CPU. But with a single work queue on the GPU side, all of the MPI work has to processed serially.

And this would all be fine if each MPI-related computation filled up the GPU, but that's rarely the case. The result is that much of GPU is idle while it waits for the next MPI process in the queue to kick off. And the CPU is also stuck waiting for the GPU work queue to clear. To get around this, programmers are forced to rip apart their codes so that the GPU has more work to do.

Hyper-Q fixes this by creating 32 work queues in the hardware. So up to 32 MPI tasks can be running on the GPU simultaneously, or until the processor fills up. The bottom line is that more work can be done by the GPU in a given amount of time. The CPU is happier too, since the work being sent to the GPU is being consumed at lot faster.

Messmer says the best part of this is that developers don't need to modify their codes to rebalance the work for the GPU. They can just run the MPI application as is -- running it through the latest CUDA SDK -- and the K20 hardware will suck up to 32 MPI processes into the GPU and do all the work balancing automatically. To the application, that makes it feel more like one multicore CPU talking to another.

The example Messmer illustrates in his blog post is CP2K, an open-source application that does atomic and molecular simulations. Running it on a Fermi part, produced little speedup compared to a CPU-only rung, but using a K20, they were able to get a 2.5x performance boost.

Although the K20 won't be available until the fourth quarter, Messmer says you get ahead of the game and start porting your MPI code to GPUs today with the new OpenACC compiler technology. OpenACC is a high-level framework that uses directives inserted in regular source code to tell the compiler which application pieces are going to the GPU. For MPI processes, directives are inserted into corresponding source, and the compiler generates the code to funnel the computation to the GPU. With Hyper-Q in effect, that work will now be executed in as parallel a manner as possible.


Full story at NVIDIA website

Sponsored Links

High-Performance Computing in Action
Businesses that want to be on the cutting edge of their industries are increasingly turning to high-performance computing (HPC) solutions to handle complex compute processes and speed up their rate of innovation. Download this Executive Brief to see how businesses in energy, life sciences and entertainment put HPC solutions to work in their operations.

Webinar: Programming Heterogeneous X64+GPU Systems Using OpenACC
Join Michael Wolfe as he compares the advantages and costs of using both low-level models and the directive-based OpenACC model for programming accelerated heterogeneous systems. Registration is free.

Accelerate your science with Seneca
One of the first HPC providers installing a 4X NVIDIA Kepler K-20 cluster. Invites you to a free evaluation on Seneca’s NVIDIA K20 Kepler cluster, pre-loaded with AMBER, NAMD, LAMMPS

May 24, 2013

May 23, 2013

May 22, 2013

May 21, 2013

May 20, 2013

May 17, 2013

May 16, 2013

May 15, 2013

May 14, 2013

May 13, 2013


Most Read Features

Most Read Around the Web

Most Read This Just In

Supermicro

Feature Articles

Exascale Advocates Stand on Nuclear Stockpiles

In quieter times, sounding the bell of funding big science with big systems tends to resonate further than when ears are already burning with sour economic and national security news. For exascale's future, however, the time could be ripe to instill some sense of urgency....
Read more...

NSF Forges Further Beyond FLOPs

In a recent solicitation, the NSF laid out needs for furthering its scientific and engineering infrastructure with new tools to go beyond top performance, Having already delivered systems like Stampede and Blue Waters, they're turning an eye to solving data-intensive challenges. We spoke with the agency's Irene Qualters and Barry Schneider about..
Read more...

CERN, Google Drive Future of Global Science Initiatives

Large-scale, worldwide scientific initiatives rely on some cloud-based system to both coordinate efforts and manage computational efforts at peak times that cannot be contained within the combined in-house HPC resources. Last week at Google I/O, Brookhaven National Lab’s Sergey Panitkin discussed the role of the Google Compute Engine in providing computational support to ATLAS, a detector of high-energy particles at the Large Hadron Collider (LHC).
Read more...

Sponsored Whitepapers

Best Practices in Big Data Storage

05/10/2013 | Cleversafe, Cray, DDN, NetApp, & Panasas | From Wall Street to Hollywood, drug discovery to homeland security, companies and organizations of all sizes and stripes are coming face to face with the challenges – and opportunities – afforded by Big Data. Before anyone can utilize these extraordinary data repositories, however, they must first harness and manage their data stores, and do so utilizing technologies that underscore affordability, security, and scalability.

Progress in Parallel: the Bull Parallel Programming Center

04/15/2013 | Bull | “50% of HPC users say their largest jobs scale to 120 cores or less.” How about yours? Are your codes ready to take advantage of today’s and tomorrow’s ultra-parallel HPC systems? Download this White Paper by Analysts Intersect360 Research to see what Bull and Intel’s Center for Excellence in Parallel Programming can do for your codes.

Sponsored Multimedia

SGI DMF ZeroWatt Disk Solution

In this demonstration of SGI DMF ZeroWatt disk solution, Dr. Eng Lim Goh, SGI CTO, discusses a function of SGI DMF software to reduce costs and power consumption in an exascale (Big Data) storage datacenter.

Cray CS300-AC Cluster Supercomputer Air Cooling Technology Video

The Cray CS300-AC cluster supercomputer offers energy efficient, air-cooled design based on modular, industry-standard platforms featuring the latest processor and network technologies and a wide range of datacenter cooling requirements.

SC12 Editorial Feature HPCwire Soundbite sponsored by ISC

HPC Job Bank


Featured Events


  • June 16, 2013 - June 20, 2013
    ISC'13
    Leipzig,
    Germany

  • June 17, 2013 - June 18, 2013
    Forecast 2013
    San Francisco, CA
    United States





HPCwire Events