Convey Computer
CSCS Top Right Frontpage
HPCwire

Since 1986 - Covering the Fastest Computers
in the World and the People Who Run Them

Language Flags

Visit additional Tabor Communication Publications

Datanami
Digital Manufacturing Report
HPC in the Cloud
Green Computing Report

Tabor Communications
Corporate Video

Stanford Lights Up One Million Sequoia Cores


The 20 petaflop, third-generation IBM BlueGene system, Sequoia, may be the number two supercomputer according to the latest TOP500 rankings, but when it comes to max core usage, Sequoia has apparently set a new record. A team of Stanford engineers harnessed one million of Sequoia's nearly 1.6 million CPUs in parallel to solve a sophisticated fluid dynamics problem.

Sequoia, the crown jewel of Lawrence Livermore National Laboratory (LLNL), was the fastest supercomputer in the world from June 2012 until November 2012, when it was knocked from its perch by another DOE machine, Titan, the 27 petaflop (peak) Cray XK7 system installed at Oak Ridge National Lab. Sequoia's 96 racks house 98,304 compute nodes, nearly 1.6 million cores and 1.6 petabytes of memory, connected by a 5-dimensional torus interconnect.

IBM Sequoia
Researchers from Stanford Engineering's Center for Turbulence Research (CTR) used Sequoia to model the noise output of supersonic jet engines with the aim of designing quieter aircraft engines. Minimizing this dangerous acoustical hazard is important not only for the health and safety of the ground grew, but for the surrounding communities. In addition to the hearing damage that can result from sustained high-decibel exposure, there is a "noise nuisance" factor that affects property values.

Advanced computer models called predictive simulations enabled scientists to "look" inside the engine's harsh environment to examine processes that would otherwise be off-limits to physical experimental designs. The information attained from this data-intensive simulation helps researchers gain insight into the "physics of noise."

Jet noise simulation
Jet noise simulation. A new design for an engine nozzle is shown in gray at left. Exhaust temperatures are in red/orange. The sound field is blue/cyan. (Source: the Center for Turbulence Research, Stanford University)

"Computational fluid dynamics (CFD) simulations, like the one Nichols solved, are incredibly complex. Only recently, with the advent of massive supercomputers boasting hundreds of thousands of computing cores, have engineers been able to model jet engines and the noise they produce with accuracy and speed," said Parviz Moin, the Franklin M. and Caroline P. Johnson Professor in the School of Engineering and Director of CTR.

For Joseph Nichols, a research associate who worked on the project, and the rest of the team, there is a lot to celebrate: the successful full-scale implementation of Sequoia, breaking the million-core barrier, and the real-world benefits of this research.

"These runs represent at least an order-of-magnitude increase in computational power over the largest simulations performed at the Center for Turbulence Research previously," said Nichols. "The implications for predictive science are mind-boggling."

The project relied on a code called CharLES that was developed by former Stanford senior research associate, Frank Ham. A high-fidelity unstructured compressible flow solver, CharLES is an ideal code for aeroacoustic applications characterized by high-speed flows and complex geometries.

CFD simulations are a good way to test the entire supercomputer, because they stress all the components, computation, memory and communication. Ideally, systems with more cores should be able to handle more difficult problems in less time, but system complexity comes with its own challenges and million-way parallelism can create unexpected bottlenecks.

As computers continue to hit their 1000-fold marks, one of the most difficult tasks is developing real-world applications that can scale to make use of the entire machine. Sequoia is already making something of a name for itself in this regard. Last month, the system achieved nearly 14 petaflops on the Hardware/Hybrid Accelerated Cosmology Codes (HACC), just a couple of petaflops shy of its 16.2 petaflop Linpack measurement (and nearly 70 percent of its peak flops).

This latest announcement from Stanford didn't discuss FLOPS, but we can gather that the jet engine simulation employed nearly two-thirds of Sequoia's total core count (one-million out of a possible 1,572,864). In the ideal scenario, all available cores would be put to use, but that proposition gets more difficult every decade. Exascale computers, for example, will likely have billions of cores. What will it take to achieve billion-way parallelism?

"Every generation in computing increases the complexity of the system," noted Mark Seager, former assistant department head for advanced computing technology at LLNL's Integrated Computing and Communications Department, in a DOE Office of Science feature.

"Every factor of 10 improvement in computing-delivered performance brings an entirely new vista of problems that we can solve and physics that we can investigate, but to scale up by a factor of 10 in parallelism isn't easy," he added.

Sponsored Links

Accelerate your science with Seneca
One of the first HPC providers installing a 4X NVIDIA Kepler K-20 cluster. Invites you to a free evaluation on Seneca’s NVIDIA K20 Kepler cluster, pre-loaded with AMBER, NAMD, LAMMPS

High-Performance Computing in Action
Businesses that want to be on the cutting edge of their industries are increasingly turning to high-performance computing (HPC) solutions to handle complex compute processes and speed up their rate of innovation. Download this Executive Brief to see how businesses in energy, life sciences and entertainment put HPC solutions to work in their operations.

May 17, 2013

May 16, 2013

May 15, 2013

May 14, 2013

May 13, 2013

May 10, 2013

May 09, 2013

May 08, 2013

May 07, 2013

May 06, 2013


Cray CS300-LC

Short Takes

Running Computational Fluid Dynamics in the Cloud

May 16, 2013 | When it comes to cloud, long distances mean unacceptably high latencies. Researchers from the University of Bonn in Germany examined those latency issues of doing CFD modeling in the cloud by utilizing a common CFD and its utilization in HPC instance types including both CPU and GPU cores of Amazon EC2.
Read more...

Computing the Physics of Bubbles

May 15, 2013 | Supercomputers at the Department of Energy’s National Energy Research Scientific Computing Center (NERSC) have worked on important computational problems such as collapse of the atomic state, the optimization of chemical catalysts, and now modeling popping bubbles.
Read more...

Internet2 Awards Program Seeks Innovative Applications

May 10, 2013 | Program provides cash awards up to $10,000 for the best open-source end-user applications deployed on 100G network.
Read more...

Floating Funding to Exascale Island

May 09, 2013 | The Japanese government has revealed its plans to best its previous K Computer efforts with what they hope will be the first exascale system...
Read more...

HPC and the True Cost of Cloud

May 08, 2013 | For engineers looking to leverage high-performance computing, the accessibility of a cloud-based approach is a powerful draw, but there are costs that may not be readily apparent.
Read more...

Sponsored Whitepapers

Best Practices in Big Data Storage

05/10/2013 | Cleversafe, Cray, DDN, NetApp, & Panasas | From Wall Street to Hollywood, drug discovery to homeland security, companies and organizations of all sizes and stripes are coming face to face with the challenges – and opportunities – afforded by Big Data. Before anyone can utilize these extraordinary data repositories, however, they must first harness and manage their data stores, and do so utilizing technologies that underscore affordability, security, and scalability.

Progress in Parallel: the Bull Parallel Programming Center

04/15/2013 | Bull | “50% of HPC users say their largest jobs scale to 120 cores or less.” How about yours? Are your codes ready to take advantage of today’s and tomorrow’s ultra-parallel HPC systems? Download this White Paper by Analysts Intersect360 Research to see what Bull and Intel’s Center for Excellence in Parallel Programming can do for your codes.

Sponsored Multimedia

SGI DMF ZeroWatt Disk Solution

In this demonstration of SGI DMF ZeroWatt disk solution, Dr. Eng Lim Goh, SGI CTO, discusses a function of SGI DMF software to reduce costs and power consumption in an exascale (Big Data) storage datacenter.

Cray CS300-AC Cluster Supercomputer Air Cooling Technology Video

The Cray CS300-AC cluster supercomputer offers energy efficient, air-cooled design based on modular, industry-standard platforms featuring the latest processor and network technologies and a wide range of datacenter cooling requirements.

SC12 Editorial Feature HPCwire Soundbite sponsored by ISC

HPC Job Bank


Featured Events


  • June 16, 2013 - June 20, 2013
    ISC'13
    Leipzig,
    Germany

  • June 17, 2013 - June 18, 2013
    Forecast 2013
    San Francisco, CA
    United States





HPCwire Events