Tag: bioinformatics

NVIDIA K80 GPU-System Speeds Up Bioinformatics Tool 12X

Jan 28, 2015 |

Not long ago, the high cost and relative slowness of DNA sequencing were the rate-limiting bottlenecks in biomedical research. Today, post-sequencing data analysis is the biggest challenge. The reason, of course, is the prodigious output from modern next-generation sequencing (NGS) instruments (e.g., Illumina and ThermoFisher/Life Technologies) overwhelming analysis pipelines. Efficiently sifting the data treasure trove Read more…

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NSF Signs $1.4 Million Check to Advance Community Database

Jan 21, 2015 |

Thanks to an NSF award worth $1.4 million, bioinformatics researchers at Washington State University and Clemson University and elsewhere will soon have the kind of infrastructure capable of supporting 21st century big data genomics workloads. As part of the Tripal Gateway project, the multi-university team will work to enhance the scope and capacity of their existing Read more…

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Pathogens Can’t Hide from Novel HPC Approach

Jan 21, 2015 |

In the realm of pathogenic threats, there are the usual suspects – anthrax, botulism, tuberculosis – but in reality there are a whole host of bacterial and viral pathogenic microbes that can be problematic to human and animal health. Protecting the public against these threats falls under the domain of biosecurity. While staying ahead of Read more…

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Software Pinpoints Disease-Causing Genes

Oct 28, 2013 |

In what’s being heralded as a breakthrough in bioinformatics research, European researchers have developed a new software suite, called eXtasy, that automatically generates the most likely cause of a given genetic disorder. A team of scientists from iMinds, STADIUS, and Katholieke Universiteit Leuven (KU Leuven) built the new tool using advanced artificial intelligence techniques that Read more…

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Coding Bioinformatics into the Cloud

Jul 24, 2013 |

A team comprised primarily of researchers from the Technical University of Munich published a paper this month on a system that will offer cloud functionality to a bioinformatics toolset that covers high performance applications.

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HPC in the Cloud Research Roundup

Mar 29, 2013 |

<img src=”http://media2.hpcwire.com/hpccloud/cloud_graphic_150x.jpg” alt=”” width=”94″ height=”81″ />Our top HPC cloud research story this week lays out a lightweight approach to implementing virtual machine monitors. Other items explore an innovative parallel cloud storage system, HPC-to-cloud migration, anywhere-anytime cluster monitoring, and a framework for cloud storage.

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The Week in HPC Research

Mar 21, 2013 |

<img src=”http://media2.hpcwire.com/hpcwire/Cloud_Storage_and_Bioinformatics_in_a_private_cloud_Fig._3_150x.png” alt=”” width=”95″ height=”95″ />The top research stories of the week include an evaluation of sparse matrix multiplication performance on Xeon Phi versus four other architectures; a survey of HPC energy efficiency; performance modeling of OpenMP, MPI and hybrid scientific applications using weak scaling; an exploration of anywhere, anytime cluster monitoring; and a framework for data-intensive cloud storage.

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Can Google’s Page Ranking Algorithm Cure Cancer?

May 23, 2012 |

Computational biologists tweak PageRank to correlate protein markers with disease progression.

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Vendors Demo Next-Gen Sequencing Platforms for Pharma

May 14, 2012 |

During the second annual Pistoia Alliance conference, three teams demonstrated their newly-implemented cloud-based next-generation sequencing platforms.

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CycleCloud BigScience Challenge Boosts Stem Cell Research

Mar 13, 2012 |

Cycle Computing has proclaimed the winner of the 2011 CycleCloud BigScience Challenge. Victor Ruotti, a computational biologist at the Morgridge Institute for Research, will receive $10,000 in credit from Cycle Computing and four hours of CycleCloud engineering support, plus an additional $2,500 in credit from Amazon Web Services. The award will be used for cutting-edge stem cell research.

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