NEC User Group Highlights: the Right Climate for Petaflops

By Christopher Lazou

June 2, 2006

May 22-26, 2006, Toronto, Canada: Some sixty experts from four continents, but mostly from European countries and Japan, attended the NEC User Group, NUG-XVIII meeting, hosted by the University of Toronto, in Toronto, Canada.

Professor Dr. Michael Resch, director of the HPC center – Hoechstleistungsrechenzentrum (HLRS) in Stuttgart, and Chair of the NUG, grafted an excellent program of talks, which enabled experts in computing, meteorology, hydropower and other technical engineering fields, to share their latest research results, crystalize future hardware and software needs and collectively leverage NEC to take these onboard in their development plans for new systems. These needs are not only for faster more powerful systems for the scientific and technical market, but also in data management and storage handling, requiring petabytes-sized file systems. In short, users want an infrastructure that delivers a timely total solution to their application.

In the climate/environment field, short-term climate prediction requires 20 teraflops of performance and 10 terabytes of memory and this is currently satisfied by the Earth Simulator and the NEC SX-8. Long-term climate prediction requires around 200 teraflops and 100 terabytes, whilst forecast of local hazards requires around one petaflop and 500 terabytes. NEC described how it is putting in place a program to deliver this sustained performance on its journey toward petaflops computing, which is in line with the Japanese government program. Below are a few extracts from these talks to give a flavor of the event.

Because of global warming, the frequency of extreme events such as flash flooding are on the increase. So national weather centers are in the process of refining their local weather prediction models from coarser grids down to 1 kilometer to improve the accuracy of their prediction. To achieve this refinement in a timely fashion requires the most powerful and productive supercomputers available. At present informed opinion concurs, that the parallel vector processors in the NEC SX series, are most suited for this task. In the meteorology field, the Total Cost of Ownership (TCO) of the NEC SX system compares very favorably with PC clusters. Its productivity is not only unsurpassed, but it is streets ahead compared to any other system. In addition, its high integration and fast memory/communication bandwidth provides the capability for higher resolution global and regional numerical models, which at the same time enables the inclusion of new science and different assumptions in the models.

In Europe, several large facilities dedicated to weather and climate predictions run NEC SX systems. These include DKRZ in Germany, the UK Met Office and the Danish Meteorological Institute as well as other countries. They will soon to be joined by Meteo France, which as I understand, ordered a 21 teraflops NEC SX system.
In all these countries, climate modeling is an important element of their activities. They are actively involved in research for the International Panel on Climate Change (IPCC), validating scenario simulations for the IPCC AR4 conclusions expected in 2007. The results from these scenarios show that the world is going to be a much hotter place with higher sea levels by 2100, contributing to the destruction of several hundred million people due to the loss of arable land. This has serious strategic implications for long-term strategic economic planning, not only for individual countries, but also for the whole world.

Having listened to Al Gore on U.S. television, explaining to the American public the dire consequences of continuing to generate excessive greenhouse gases, one can't help but muse: “One tiny fluctuation on few voting forms in Florida may forever change the future course of the world….” (In the spirit of Lorenz, 1963).

Professor Richard Peltier, University of Toronto, gave the first keynote titled: “HPC Applications in Geophysical Fluid Dynamics.” He described the NCAR CCSM model using standard semi-spectral atmosphere and Cartesian structured grid ocean, the Jovian jet model using a triangular block-structured icosahedral grid, and a new technique of unstructured grid climate modeling using fully unstructured triangular grids. The reconstruction of past climates simulating 100 thousand years of North Atlantic climate variability was performed using the NCAR CCSM3 Model. This showed the Younger Dryas cold reversal and the Eemian last interglacial around 21 thousand years ago. The Greenland ice cores show that variability was stable until about 25,000 years ago. Between 25 and 10 thousand years ago, it became very unstable and deglaciation took place. The planet remembers circulation by the change in the ratio of isotopes. During a short period of warming, it reduced the ice by 40 percent and the water shot up north through the McKenzie river basin, stopping the “Global ocean conveyor” circulation and causing 10 degrees centigrade of cooling. The global circulation overturning the oceans is driven by the North Atlantic deepwater formation, originating in the Greenland, Iceland, and Norwegian (GIN) seas. These studies are used to verify climate models for simulation of future climate trends.

Professor Peltier summarized as follows: The UofT GFD group at Toronto University is involved in a wide range of CFD based analyses of important environmental processes. The current focus of much of the work is on the development of software, based upon unstructured grid technology. This work will be dramatically advanced with installation of a next-generation NEC SX parallel vector system.

Both NWP and climate research generate enormous amounts of data, presently over one petabyte per year, which requires archiving. Thus, weather/climate centers have heterogeneous computer facilities, with separate compute and file servers, the latter dedicated to handling the increasing data, using a unified file system.

Professor Eberhard Goede, University of Stuttgart, gave a talk on: “The beauty of engineering in hydropower.” He enthusiastically described a number of projects, where by using simulation on high productivity computers such as the NEC SX-8 they have in Stuttgart, solved engineering problems in the design of turbines, improving their running efficiency by 10 to 20 percent. He gave examples from the Itaipu, Rio Parana, Brazil, which until recently was the largest hydroelectric power station in the world. This plant is running 18 turbines using 8 meter blades, with a total production capacity of 13 GigaWatts. An even larger hydroelectric plant has been build by the Chinese, at the 3 Gorges. It uses 10 meter blades each weighing 430 tons, a total of 3,200 tons rotating at 750 revolutions per minute. It has the capacity of 10 nuclear power plants or 18 coal-fired ones. Using video sequences during his talk, he gave many real-time examples where instabilities due to turbulence were observed. Once identified, the problems were solved, reducing loss of energy and making the plant more efficient. Using mathematical simulation methods to optimize flow can often improve efficiency by 10 percent and the benefits from this improvement are enormous. He reminded the audience not to forget the power of simplification by quoting Albert Einstein: “All should be as simple as possible, but not simpler.”

Professor Satoshi Matsuoka, from the Tokyo Institute of Technology gave a talk titled: “The flight of Tsubame (swallow).” He briefly described the rationale and design decisions they made in the integration of the 100 teraflops cluster they have just installed at their Institute. This system was installed two months ago and is up and running, providing a service to 10,000 students at their campus.

Although the system main integrator was NEC, Sun Microsystems provided the Galaxy compute nodes, AMD, the Opteron CPU, ClearSpeed, the SIMD co-processor and NAGERI from Israel, the network. They used 10,480 cores in 655 nodes of Sun Galaxy (Opteron 8-way dual core), rated at 50.4 teraflops peak. This is augmented with 360 boards of low power ClearSpeed co-processors, adding another 35 teraflops peak. There are plans to upgrade this to 60 teraflops peak. They have 1.1 terabytes of memory and over one petabytes of storage from Sun and NEC. In addition they are planning to include an NEC SX-8 vector machine. The whole system uses a unified network using InfiniBand switches, currently at 2 gigabytes/sec per node, but this easily scales to 8 gigabytes/sec.

The design principles of Tsubame were based on capability and capacity. It uses a high performance low power x86 multi-core CPU with high versatility. It uses Fat Node architecture and, for vector acceleration, they opted for low power SIMD architecture, namely, ClearSpeed. For example, the 35 teraflops ClearSpeed co-processors fit in one rack and consumes 90 Kilowatts. Once the hybrid architecture was fixed, the installation took just three weeks. The system has been in operation for only two months, so it has not yet been fully stressed to ascertain whether it delivers the productivity envisaged in its design specification. The system was designed to last four years.

The Tsubame system has run HPL (Linpack) at 38.18 teraflops, making it the fastest system outside the USA. According to their tests it performs very well on HPCC and other benchmarks. The system delivers very uniform high performance and it is very scalable. For example, on the Gaussian test-397, it scaled up to 64 processors.

They are already looking to the future. Power constraint is a big issue. Improvements in vector acceleration and interconnect are other significant elements which need urgent attention. Nevertheless, after some analysis of what technologies are in the pipeline, they expect to have a one petaflop system in the 2010 time frame — at the same time as the 10 petaflops Blue Gene. Professor Satoshi Matsuoka went on to predict a desk-size one petascale system by 2016.

Mr. Jun Inasaka, NEC, gave a talk titled: “Critical technologies for future vector Architecture.” The talk was structured around three main topics: advanced CMOS LSI technologies for high speed and low electrical power, ultra high-speed transmission and ultra high-density (packaging) technologies.

Achieving low power consumption in devices is one of the most pressing problems facing HPC. Current technology is using a 65nm process, clocking at 3-4GHz and the next generation processors will be using 45nm, clocking at 4-5GHz. Chip power density is approaching that of a nuclear reactor and this trend is obviously unsustainable. Power density has become the biggest constraint for increasing performance, so several new innovations were incorporated in the design. For example, strained silicon transistors enhance performance without leakage penalty. Using multi-vt techniques allows threshold voltage optimization, minimizing leakage. The use of low-k interlayer dialectric decreases power requirements and by using high-k oxide it reduces leakage through gate dialectric.

Intra-node optical transmission is needed to deliver bandwidth for petaflops systems. One approach for implementing the intra-note interface for HPC is to use multi-tap pre-emphasis equalizer for optical asynchronous transmission. The requirement is for 1,000 channels with very high transmission. The challenges are manifold. For example, the reduction of attenuation and waveform distortion to achieve low jitter during transmission and reception at high speeds, that is, at speeds above 10 Gbps. Signal integrity requires high fidelity transmission cable to control impedance characteristics, minimizing transmission noise. To ensure power integrity supply noise, which may cause some deterioration of I/F link, speed must be suppressed. Noise increases non-linearly, by a factor of 10 for high speed CPUs, so the challenges are non-trivial. Nevertheless, the optical interface is expected to deliver up to 30 Gbps per channel by 2010. This optical interconnect is necessary for future systems.

Packaging is an integral and essential part of customizing the new technologies into the next generation devices, which are expected to deliver one teraflop on a chip. These chips are not likely to be air-cooled. New liquid cooling technology is developed with micro-channels for heat-sink and other enabling innovations needed to handle devices for petaflops computing.

The details in Mr. Inasaka's talk were very impressive and convinced this writer that NEC is well on its way towards petaflops systems with vector parallel architecture playing a pivotal part. Technology strategy overviews from other NEC executives were also given explaining how their deep technologies as microprocessor and telecommunications vendors is leveraged, to develop HPC future products. In addition, there were many interesting user talks, illustrating fascinating results from supercomputing centers. All in all, the meeting in Toronto, like its predecessor meetings, was very fruitful. The user community not only shared their own research and operational experiences, but also had the opportunity to leverage technology from all of NEC's businesses for their own benefit. For more detailed descriptions of the presentations, visit

Thomas Sterling, as always, gave a thought provoking keynote and lamented at the failure of qualitatively improving supercomputer systems, saying that in recent years, despite the hype about exceeding Moore's Law, we are failing to take advantage of the two to three orders of magnitude more performance available with current technologies. He claims this can be achieved by introducing not even radical modifications to current computer architectures. He went on to describe the current state of supercomputer hardware, the difficulties of increasing clock frequency, the problems of cooling multi-cores and the inherent challenges of increasing programming complexity. He stated that NEC leads in high end computing but suggested that the SX-8 can be improved with a co-processor to do process management. A more comprehensive exposition of his views and vision of supercomputing will be contained in my interview of Thomas Sterling, soon to be published, so watch this space.


Copyright (c) Christopher Lazou, HiPerCom Consultants, Ltd., UK. Brands and names are the property of their respective owners.

Subscribe to HPCwire's Weekly Update!

Be the most informed person in the room! Stay ahead of the tech trends with industy updates delivered to you every week!

OpenPOWER Reboot – New Director, New Silicon Partners, Leveraging Linux Foundation Connections

July 2, 2020

Earlier this week the OpenPOWER Foundation announced the contribution of IBM’s A21 Power processor core design to the open source community. Roughly this time last year, IBM announced open sourcing its Power instructio Read more…

By John Russell

HPC Career Notes: July 2020 Edition

July 1, 2020

In this monthly feature, we'll keep you up-to-date on the latest career developments for individuals in the high-performance computing community. Whether it's a promotion, new company hire, or even an accolade, we've got Read more…

By Mariana Iriarte

Supercomputers Enable Radical, Promising New COVID-19 Drug Development Approach

July 1, 2020

Around the world, innumerable supercomputers are sifting through billions of molecules in a desperate search for a viable therapeutic to treat COVID-19. Those molecules are pulled from enormous databases of known compoun Read more…

By Oliver Peckham

HPC-Powered Simulations Reveal a Looming Climatic Threat to Vital Monsoon Seasons

June 30, 2020

As June draws to a close, eyes are turning to the latter half of the year – and with it, the monsoon and hurricane seasons that can prove vital or devastating for many of the world’s coastal communities. Now, climate Read more…

By Oliver Peckham

Hyperion Forecast – Headwinds in 2020 Won’t Stifle Cloud HPC Adoption or Arm’s Rise

June 30, 2020

The semiannual taking of HPC’s pulse by Hyperion Research – late fall at SC and early summer at ISC – is a much-watched indicator of things come. This year is no different though the conversion of ISC to a digital Read more…

By John Russell

AWS Solution Channel

Maxar Builds HPC on AWS to Deliver Forecasts 58% Faster Than Weather Supercomputer

When weather threatens drilling rigs, refineries, and other energy facilities, oil and gas companies want to move fast to protect personnel and equipment. And for firms that trade commodity shares in oil, precious metals, crops, and livestock, the weather can significantly impact their buy-sell decisions. Read more…

Intel® HPC + AI Pavilion

Supercomputing the Pandemic: Scientific Community Tackles COVID-19 from Multiple Perspectives

Since their inception, supercomputers have taken on the biggest, most complex, and most data-intensive computing challenges—from confirming Einstein’s theories about gravitational waves to predicting the impacts of climate change. Read more…

What’s New in HPC Research: Mosquitoes, [email protected], the Last Journey & More

June 29, 2020

In this bimonthly feature, HPCwire highlights newly published research in the high-performance computing community and related domains. From parallel programming to exascale to quantum computing, the details are here. Read more…

By Oliver Peckham

OpenPOWER Reboot – New Director, New Silicon Partners, Leveraging Linux Foundation Connections

July 2, 2020

Earlier this week the OpenPOWER Foundation announced the contribution of IBM’s A21 Power processor core design to the open source community. Roughly this time Read more…

By John Russell

Hyperion Forecast – Headwinds in 2020 Won’t Stifle Cloud HPC Adoption or Arm’s Rise

June 30, 2020

The semiannual taking of HPC’s pulse by Hyperion Research – late fall at SC and early summer at ISC – is a much-watched indicator of things come. This yea Read more…

By John Russell

Racism and HPC: a Special Podcast

June 29, 2020

Promoting greater diversity in HPC is a much-discussed goal and ostensibly a long-sought goal in HPC. Yet it seems clear HPC is far from achieving this goal. Re Read more…

Top500 Trends: Movement on Top, but Record Low Turnover

June 25, 2020

The 55th installment of the Top500 list saw strong activity in the leadership segment with four new systems in the top ten and a crowning achievement from the f Read more…

By Tiffany Trader

ISC 2020 Keynote: Hope for the Future, Praise for Fugaku and HPC’s Pandemic Response

June 24, 2020

In stark contrast to past years Thomas Sterling’s ISC20 keynote today struck a more somber note with the COVID-19 pandemic as the central character in Sterling’s annual review of worldwide trends in HPC. Better known for his engaging manner and occasional willingness to poke prickly egos, Sterling instead strode through the numbing statistics associated... Read more…

By John Russell

ISC 2020’s Student Cluster Competition Winners Announced

June 24, 2020

Normally, the Student Cluster Competition involves teams of students building real computing clusters on the show floors of major supercomputer conferences and Read more…

By Oliver Peckham

Hoefler’s Whirlwind ISC20 Virtual Tour of ML Trends in 9 Slides

June 23, 2020

The ISC20 experience this year via livestreaming and pre-recordings is interesting and perhaps a bit odd. That said presenters’ efforts to condense their comments makes for economic use of your time. Torsten Hoefler’s whirlwind 12-minute tour of ML is a great example. Hoefler, leader of the planned ISC20 Machine Learning... Read more…

By John Russell

At ISC, the Fight Against COVID-19 Took the Stage – and Yes, Fugaku Was There

June 23, 2020

With over nine million infected and nearly half a million dead, the COVID-19 pandemic has seized the world’s attention for several months. It has also dominat Read more…

By Oliver Peckham

Supercomputer Modeling Tests How COVID-19 Spreads in Grocery Stores

April 8, 2020

In the COVID-19 era, many people are treating simple activities like getting gas or groceries with caution as they try to heed social distancing mandates and protect their own health. Still, significant uncertainty surrounds the relative risk of different activities, and conflicting information is prevalent. A team of Finnish researchers set out to address some of these uncertainties by... Read more…

By Oliver Peckham

[email protected] Turns Its Massive Crowdsourced Computer Network Against COVID-19

March 16, 2020

For gamers, fighting against a global crisis is usually pure fantasy – but now, it’s looking more like a reality. As supercomputers around the world spin up Read more…

By Oliver Peckham

[email protected] Rallies a Legion of Computers Against the Coronavirus

March 24, 2020

Last week, we highlighted [email protected], a massive, crowdsourced computer network that has turned its resources against the coronavirus pandemic sweeping the globe – but [email protected] isn’t the only game in town. The internet is buzzing with crowdsourced computing... Read more…

By Oliver Peckham

Global Supercomputing Is Mobilizing Against COVID-19

March 12, 2020

Tech has been taking some heavy losses from the coronavirus pandemic. Global supply chains have been disrupted, virtually every major tech conference taking place over the next few months has been canceled... Read more…

By Oliver Peckham

Supercomputer Simulations Reveal the Fate of the Neanderthals

May 25, 2020

For hundreds of thousands of years, neanderthals roamed the planet, eventually (almost 50,000 years ago) giving way to homo sapiens, which quickly became the do Read more…

By Oliver Peckham

DoE Expands on Role of COVID-19 Supercomputing Consortium

March 25, 2020

After announcing the launch of the COVID-19 High Performance Computing Consortium on Sunday, the Department of Energy yesterday provided more details on its sco Read more…

By John Russell

Steve Scott Lays Out HPE-Cray Blended Product Roadmap

March 11, 2020

Last week, the day before the El Capitan processor disclosures were made at HPE's new headquarters in San Jose, Steve Scott (CTO for HPC & AI at HPE, and former Cray CTO) was on-hand at the Rice Oil & Gas HPC conference in Houston. He was there to discuss the HPE-Cray transition and blended roadmap, as well as his favorite topic, Cray's eighth-gen networking technology, Slingshot. Read more…

By Tiffany Trader

Honeywell’s Big Bet on Trapped Ion Quantum Computing

April 7, 2020

Honeywell doesn’t spring to mind when thinking of quantum computing pioneers, but a decade ago the high-tech conglomerate better known for its control systems waded deliberately into the then calmer quantum computing (QC) waters. Fast forward to March when Honeywell announced plans to introduce an ion trap-based quantum computer whose ‘performance’ would... Read more…

By John Russell

Leading Solution Providers


Neocortex Will Be First-of-Its-Kind 800,000-Core AI Supercomputer

June 9, 2020

Pittsburgh Supercomputing Center (PSC - a joint research organization of Carnegie Mellon University and the University of Pittsburgh) has won a $5 million award Read more…

By Tiffany Trader

‘Billion Molecules Against COVID-19’ Challenge to Launch with Massive Supercomputing Support

April 22, 2020

Around the world, supercomputing centers have spun up and opened their doors for COVID-19 research in what may be the most unified supercomputing effort in hist Read more…

By Oliver Peckham

Australian Researchers Break All-Time Internet Speed Record

May 26, 2020

If you’ve been stuck at home for the last few months, you’ve probably become more attuned to the quality (or lack thereof) of your internet connection. Even Read more…

By Oliver Peckham

15 Slides on Programming Aurora and Exascale Systems

May 7, 2020

Sometime in 2021, Aurora, the first planned U.S. exascale system, is scheduled to be fired up at Argonne National Laboratory. Cray (now HPE) and Intel are the k Read more…

By John Russell

Nvidia’s Ampere A100 GPU: Up to 2.5X the HPC, 20X the AI

May 14, 2020

Nvidia's first Ampere-based graphics card, the A100 GPU, packs a whopping 54 billion transistors on 826mm2 of silicon, making it the world's largest seven-nanom Read more…

By Tiffany Trader

10nm, 7nm, 5nm…. Should the Chip Nanometer Metric Be Replaced?

June 1, 2020

The biggest cool factor in server chips is the nanometer. AMD beating Intel to a CPU built on a 7nm process node* – with 5nm and 3nm on the way – has been i Read more…

By Doug Black

Summit Supercomputer is Already Making its Mark on Science

September 20, 2018

Summit, now the fastest supercomputer in the world, is quickly making its mark in science – five of the six finalists just announced for the prestigious 2018 Read more…

By John Russell

TACC Supercomputers Run Simulations Illuminating COVID-19, DNA Replication

March 19, 2020

As supercomputers around the world spin up to combat the coronavirus, the Texas Advanced Computing Center (TACC) is announcing results that may help to illumina Read more…

By Staff report

  • arrow
  • Click Here for More Headlines
  • arrow
Do NOT follow this link or you will be banned from the site!
Share This