Contrary View: CPUs Sometimes Best for Big Data Visualization

By Jim Jeffers, Intel

December 1, 2015

Editor’s Note: Perhaps not surprisingly, Intel is mounting arguments that CPUs are a viable alternative for many visualization applications traditionally best served by GPUs. Here, Jim Jeffers, Engineering Manager & PE, Visualization Engineering at Intel, makes the case for CPU-based Software Defined Visualization.

Contrary to conventional thinking, GPUs are often not the best vehicles for big data visualization. In this commentary, I discuss several key technical reasons why a CPU-based “Software Defined Visualization” approach can deliver a more flexible, performant, scalable, cost effective, and power efficient solution to big data visualization than a conventional GPU-based approach.

An example from my Intel Developer Forum 2015 talk, Software Defined Visualization: Fast, Flexible Solutions For Rendering Big Data1 showed that a single Intel Xeon processor E7 v3 workstation containing 3TB (trillion bytes) of RAM was able to render a 12-billion particle, 450 GB cosmology dataset at seven frames per second2. For that input data set, it would take more than 75 GPUs with 6GBs local memory to perform the same scientific visualization task. The on-par performance of a single Intel Xeon processor vs. a 128-node GPU cluster has been confirmed in the technical literature. Similarly, my IDF 2015 presentation highlighted a ray-tracing benchmark driven by a SIGGRAPH ‘14 paper review committee request to realistically compare performance between Intel’s CPU-based Ray tracing solutions and NIVIDA’s GPU-based solutions. We found on recent typical HPC level CPU and GPU platforms with several different data models, there is a nearly 4x performance superiority of Intel’s CPU-based Software Defined Visualization (SDVis) approach for our Embree open-source project, in an apples-to-apples comparison over NVIDIA’s hardware accelerated Optix ray-tracing engine (See Figure 1 below).

Intel.Jeffers Fig 1.12.1.15Looking forward, massive memory, faster on-package memory, lots-of-cores providing in-situ visualization options are a few of the characteristics that will give the forthcoming Intel Xeon Phi code name Knights Landing the ability to deliver significantly better performance, which should make Intel Xeon Phi processor-based platforms a premier scientific visualization and professional rendering platform over the next few years – a hardware advantage that will continue to catapult software defined visualization into even greater prominence due to the use of in-situ visualization that can minimize expensive data movement as the industry transitions into the Exascale computing era.

Software Defined Visualization

The idea behind SDVis is that the size of the data, which generally maps to simulation accuracy and also image fidelity is often too big even for today’s high-end GPU memory to render without multiple tiling passes and associated data transfer penalties. Focusing rendering solutions on handling both the size and type of data rather than primarily for gaming uses means that SDVis software components can be designed to best utilize massive-memory hardware and parallel algorithms that can scale as needed across the nodes in a cluster or inside a computational cloud. We have been focused on creating and supporting freely downloadable open-source packages such as: (1) the OSPRay open, scalable, and portable ray tracing engine; (2) the Embree library of high-performance ray-tracing kernels; and (3) OpenSWR, a drop-in OpenGL highly scalable and performant CPU-based software rasterizer These all provide core functionality to enable current and new SDVis applications.

The motivation for SDVis can be summarized in the following three points:

  1. The size of the data alone is reason enough for adopting a Software Defined Visualization approach as the quantity of data implies a visualization quality (or fidelity) that is too big for the memory of discrete PCIe devices like GPUs. As we will see, limited GPU memory and the limited bandwidth of the PCIe bus conspire to make GPUs uneconomical for big-data visualization. The SDVis approach also gives developers the freedom to exploit the nearly three orders of magnitude greater RAM capacity of a high-end Intel Xeon processor-based workstation (measured in terabytes) as compared to the low gigabytes of memory that can be installed on a discrete GPU.
  2. As we move toward ever larger and more detailed simulations, it is necessary to scale visualization with the simulation software so that the big data can be quickly rendered, which is why in-situ visualization will likely become a requirement as the industry moves towards Exascale computing. Data movement is simply becoming too expensive from a time and power perspective, yet discrete GPUs don’t have the memory capacity and PCIe bandwidth to run both the rendering software and scientific simulation on the same hardware at the same time.
  3. Finally, flexibility is a must, which is why we at Intel focused on a software defined visualization approach for HPC and large data systems as opposed to targeted graphics hardware. This focus from a company famous for its hardware reflects the strong motivations and benefits behind the decision to adopt a software-based approach.

The cosmology visualization example from my previously mentioned IDF 2015 talk, Software Defined Visualization: Fast, Flexible Solutions For Rendering Big Data, illustrated in Figure 2, brings concreteness to this discussion as a single quad-socket Intel Xeon processor E7 v3 workstation was able to visualize a 12-billion (450 GB,) particle dataset and render it with a 4k resolution at 7 FPS (Frames Per Second)2. This highly detailed visualization included ambient occlusion using a zero-overhead p-k-d tree and required no changes to level-of-detail or other form of simplification.

Jeffers.Intel.2Figure 2: Example rendering of the 12-billion particle (450 GB) Cosmic Web dataset (Complements of Ingo Wald, Aaron Knoll, Gregory P. Johnson, Will Usher, Valerio Pascucci and Michael E. Papka. “CPU Ray Tracing Large Particle Data with P-k-d Trees.”

In comparison, PCIe devices like GPUs are at a disadvantage for big memory visual applications because of their limited amount of on-board memory plus the fact that they can only access host memory (and hence network and storage data) via a very slow (relative to the memory subsystem of a modern Xeon processor) PCIe bus. This means that currently even the most advanced PCIe based devices can only read data at a peak theoretical bandwidth of 16 GB/s (billion bytes per second), although in reality the actual observed PCIe data transfer rate will be lower. Still, we can calculate that 29 theoretically ideal PCIe devices will be required to read a 450 GB dataset in one second (e.g. 450 GB ÷ 16 GB/s = 29 devices). Thus a cluster containing a minimum of 203 (29 * 7) ideal PCIe devices – each on a dedicated PCIe bus as there can be no bandwidth sharing – will be required to provide sufficient PCIe bandwidth to load the example 450 GB cosmology dataset in 1/7th of a second. The end result is that we can estimate that at least 200 GPUs will be required to read a constantly changing 450 GB numerical dataset quickly enough to even have a chance of matching the 7 FPS display rate delivered by the single Intel Xeon processor-based workstation. Obviously, a 200 GPU visualization cluster cannot compete against the superior price/performance and performance/watt ratios of a single big-memory processor-based workstation.

Moving from estimation to benchmarking, the 2015 IEEE Visualization paper by Wald, et.al., CPU Ray Tracing Large Particle Data with Balanced P-k-d Trees reported that a single, 72-core Intel Xeon processor-based workstation delivered rendering performance that was on-par with a 120-GPU visualization cluster. However, the CPU vs. GPU comparison was only a side-point in the paper.

The important contribution of CPU Ray Tracing Large Particle Data with Balanced P-k-d Trees is the introduction of an efficient CPU algorithm and zero-overhead data structure, the p-k-d tree, for traversing, classifying and ray tracing data. Based on results using an OSPRay software implementation, the authors’ claim their approach, “is able to render up to billions of particles on a typical workstation, purely on the CPU, without any approximations or level-of-detail techniques, and optionally with attribute-based color mapping, dynamic range query, and advanced lighting models such as ambient occlusion and path tracing.” For this reason, the CPU vs. GPU comparative results reported in the paper required simplified visualization techniques to run a gigascale visualizations on the GPU.

Ray-tracing is an embarrassingly parallel application that can fully exploit the SPMD (Single Program Multiple Data) parallel processing capabilities of both GPUs and CPUs. This is the reason why many of the optimized Embree kernels as well as the scalable and portable OPSRay ray-tracing engine utilize the freely downloadable ISPC (Intel SPMD Program Compiler).

From a SPMD point of view, the discriminators between the CPU and GPU processing are twofold: (1) Ray-tracing has significant serial bottlenecks including the use of tree-based data structures to identify visible objects, and (2) GPUs are locked into a hardware rasterization model that is good for gaming and other such applications – in particular triangle based depth buffering – but not for big data and ray-tracing algorithms.

Drilling down, we see that low-level standards-based raster APIs force the processing of triangles rather than visual objects. This means that all raster-based visual objects have to be expressed as a mesh of triangles where every triangle in the mesh has to be processed for visibility against a depth-buffer. While hardware optimized triangle processing can be fast – as exemplified by the success of GPUs in the gaming markets – SDVis optimized ray-tracing APIs can eliminate the triangle processing requirement altogether. This gives the SDVis library developers the freedom they need to create new ray-tracing API calls and optimized methods that can deliver algorithmic speedups far beyond what can be achieved through triangle-based hardware optimizations. This is one of several reasons why the optimized Embree and OSPRay packages are able to deliver the speedups observed on an Intel Xeon processor relative to a high-end GPU shown in Figure 1. Succinctly: we don’t play games. Instead we focus on photorealism and scientific visualization.

Of course, our SDVis approach is a natural fit for the next generation Intel Xeon Phi processor code name Knights Landing product family. Rendering, in general, is embarrassingly parallel, which provides a natural transition to the lots-of-cores parallelism of this new family of Intel Xeon Phi devices. For this reason we expect these codename Knights Landing processors to become a premiere platform for SDVis over the next few years.

Enabling Better OpenGL
Our SDVis initiative also delivers improved CPU-based OpenGL raster-graphics performance for large memory footprint scientific visualization as compared to the current standard open source CPU solution, llvmpipe in MESA3D. Figure 4 (below) shows a dramatic performance benefit on a dual socket Intel Xeon processor platform with ParaView from Kitware, Inc when using the OpenSWR path incorporated into MESA3D to render a well-known scientific data model with increasing input data sizes vs. llvmpipe.

Jeffers.Intel.3OpenSWR, with its design focus on full thread and vector parallelism for typical scientific data sets provides 29x-50x+ performance over llvmpipe.   It should be noted that llvmpipe’s primary purpose is to support the breadth of OpenGL features for each new standard version with reasonable performance across many use cases.   OpenSWR’s current focus is on supporting the most prevalent scientific visualization tools and applications, specifically, ParaView and the Visualization ToolKit from Kitware, Inc, the community open source project VisIt, and EnSight from CEI, Inc.   However, OpenSWR installs and is enabled just like any OpenGL library so no special knowledge is needed to run the supported applications.   In fact, the plan is to upstream OpenSWR to the MESA3D project allowing its use from source build to deployment to be the same MESA3D mechanisms already in place. As discussed before, for large data systems, scalability is important and early testing of OpenSWR indicates close to linear scalability when adding cores as shown in the bottom portion of Figure 3 (above).   This bodes well for allowing visual data analysts to match the data set size to the appropriate level of interactivity to best gain insight from their data visualizations.

Considering current “lessons learned” as the industry moves towards an Exascale computing future, we know that data movement is expensive in terms of runtime and power consumption. This makes in-situ visualization (which minimizes data movement by running the visualization and simulation software on the same hardware) a “must-have”. Succinctly, a picture is worth an “Exabyte”.

Current SDVis software packages like OpenSWR, Embree and OSPRay naturally support in-situ visualization as they are already designed to utilize the massive memory capacity of Intel Xeon processor and the forthcoming Intel Xeon Phi products plus, due to the excellent scaling behavior of ray-tracing algorithms like P-k-d trees and the OpenSWR OpenGL pipeline, plus these packages can run across large numbers of nodes in a compute cluster or within a computational cloud. As a result, our SDVis approach appears to be Petascale and likely Exascale capable.

In-situ visualization also provides many other advantages including the ability to immediately see the simulation results and potentially “steer” the numerical simulation while it is running. There is no need to follow a more traditional visualization workflow of: (a) simulate, (b) write to storage, (c) transfer the data to a visualization cluster and then (d) wait in a queue on the visualization cluster before being able view the results.

Application profiling has also demonstrated that the performance of memory subsystem is critical to ray-tracing performance. For this reason, we expect that the new MCDRAM memory available on some of the forthcoming Intel Xeon Phi products will provide a significant boost in performance for many rendering workloads. There is no doubt that once released, the Intel Xeon Phi processor code name Knights Landing devices will be closely scrutinized by the HPC visualization, professional rendering, and special effects communities. Unfortunately, I cannot provide performance numbers at this time except to note that our SDVis solutions are already running on a pre-production Knights Landing platform as we have demonstrated at both ISC’15 in Frankfurt and at IDF’15 in San Francisco.

Using SDVis for Non-Rendering
For those who wish to consider our SDVis approach for applications other than rendering, check out the chapter “Radio Frequency Ray-Tracing” by Christiaan Gribble and Jefferson Amstutz in High Performance Parallelism Pearls Volume 2. In this chapter – and through the example source code that is freely available on lotsofcores.com – Gribble and Amstutz demonstrated the flexibility of SDVis by adapting the Intel Embree and OSPRay packages to model the propagation of radio frequency (RF) energy in the presence of complex outdoor terrain features such as those found in urban environments. The authors state in their chapter that this capability “is critical to planning, optimizing, and analyzing wireless communication and data networks”.

jeffers.intel.headshotSo, in summary, the current performance, flexibility, and forthcoming products on the Intel Xeon processor and Intel Xeon Phi processor roadmap all reinforce Intel’s decision to follow an SDVis approach. As a result, we are able to directly address the needs of the scientific and professional rendering communities without having to fight limited memory capacity, legacy APIs, PCIe bottlenecks, and gaming raster-optimized hardware. Big memory and in-situ visualization are not luxuries, they are necessities!

Author Bio: Jim Jeffers is Engineering Manager & PE, Visualization Engineering at Intel

Footnotes:

1 Software-Defined Visualization: Fast, Flexible Solutions for Rendering Big Data” in also available in a streaming video formats

2 Software and workloads used in performance tests may have been optimized for performance only on Intel microprocessors. Performance tests, such as SYSmark* and MobileMark* , are measured using specific computer systems, components, software, operations and functions. Any change to any of those factors may cause the results to vary. You should consult other information and performance tests to assist you in fully evaluating your contemplated purchases, including the performance of that product when combined with other products. For more information go to http://www.intel.com/performance.

Subscribe to HPCwire's Weekly Update!

Be the most informed person in the room! Stay ahead of the tech trends with industy updates delivered to you every week!

InfiniBand Still Tops in Supercomputing

July 19, 2018

In the competitive global HPC landscape, system and processor vendors, nations and end user sites certainly get a lot of attention--deservedly so--but more than ever, the network plays a crucial role. While fast, perform Read more…

By Tiffany Trader

HPC for Life: Genomics, Brain Research, and Beyond

July 19, 2018

During the past few decades, the life sciences have witnessed one landmark discovery after another with the aid of HPC, paving the way toward a new era of personalized treatments based on an individual’s genetic makeup Read more…

By Warren Froelich

WCRP’s New Strategic Plan for Climate Research Highlights the Importance of HPC

July 19, 2018

As climate modeling increasingly leverages exascale computing and researchers warn of an impending computing gap in climate research, the World Climate Research Programme (WCRP) is developing its new Strategic Plan – and high-performance computing is slated to play a critical role. Read more…

By Oliver Peckham

HPE Extreme Performance Solutions

Introducing the First Integrated System Management Software for HPC Clusters from HPE

How do you manage your complex, growing cluster environments? Answer that big challenge with the new HPC cluster management solution: HPE Performance Cluster Manager. Read more…

IBM Accelerated Insights

Are Your Software Licenses Impeding Your Productivity?

In my previous article, Improving chip yield rates with cognitive manufacturing, I highlighted the costs associated with semiconductor manufacturing, and how cognitive methods can yield benefits in both design and manufacture.  Read more…

U.S. Exascale Computing Project Releases Software Technology Progress Report

July 19, 2018

As is often noted the race to exascale computing isn’t just about hardware. This week the U.S. Exascale Computing Project (ECP) released its latest Software Technology (ST) Capability Assessment Report detailing progress so far. Read more…

By John Russell

InfiniBand Still Tops in Supercomputing

July 19, 2018

In the competitive global HPC landscape, system and processor vendors, nations and end user sites certainly get a lot of attention--deservedly so--but more than Read more…

By Tiffany Trader

HPC for Life: Genomics, Brain Research, and Beyond

July 19, 2018

During the past few decades, the life sciences have witnessed one landmark discovery after another with the aid of HPC, paving the way toward a new era of perso Read more…

By Warren Froelich

D-Wave Breaks New Ground in Quantum Simulation

July 16, 2018

Last Friday D-Wave scientists and colleagues published work in Science which they say represents the first fulfillment of Richard Feynman’s 1982 notion that Read more…

By John Russell

AI Thought Leaders on Capitol Hill

July 14, 2018

On Thursday, July 12, the House Committee on Science, Space, and Technology heard from four academic and industry leaders – representatives from Berkeley Lab, Argonne Lab, GE Global Research and Carnegie Mellon University – on the opportunities springing from the intersection of machine learning and advanced-scale computing. Read more…

By Tiffany Trader

HPC Serves as a ‘Rosetta Stone’ for the Information Age

July 12, 2018

In an age defined and transformed by its data, several large-scale scientific instruments around the globe might be viewed as a ‘mother lode’ of precious data. With names seemingly created for a ‘techno-speak’ glossary, these interferometers, cyclotrons, sequencers, solenoids, satellite altimeters, and cryo-electron microscopes are churning out data in previously unthinkable and seemingly incomprehensible quantities -- billions, trillions and quadrillions of bits and bytes of electro-magnetic code. Read more…

By Warren Froelich

Tsinghua Powers Through ISC18 Field

July 10, 2018

Tsinghua University topped all other competitors at the ISC18 Student Cluster Competition with an overall score of 88.43 out of 100. This gives Tsinghua their s Read more…

By Dan Olds

HPE, EPFL Launch Blue Brain 5 Supercomputer

July 10, 2018

HPE and the Ecole Polytechnique Federale de Lausannne (EPFL) Blue Brain Project yesterday introduced Blue Brain 5, a new supercomputer built by HPE, which displ Read more…

By John Russell

Pumping New Life into HPC Clusters, the Case for Liquid Cooling

July 10, 2018

High Performance Computing (HPC) faces some daunting challenges in the coming years as traditional, industry-standard systems push the boundaries of data center Read more…

By Scott Tease

Leading Solution Providers

SC17 Booth Video Tours Playlist

Altair @ SC17

Altair

AMD @ SC17

AMD

ASRock Rack @ SC17

ASRock Rack

CEJN @ SC17

CEJN

DDN Storage @ SC17

DDN Storage

Huawei @ SC17

Huawei

IBM @ SC17

IBM

IBM Power Systems @ SC17

IBM Power Systems

Intel @ SC17

Intel

Lenovo @ SC17

Lenovo

Mellanox Technologies @ SC17

Mellanox Technologies

Microsoft @ SC17

Microsoft

Penguin Computing @ SC17

Penguin Computing

Pure Storage @ SC17

Pure Storage

Supericro @ SC17

Supericro

Tyan @ SC17

Tyan

Univa @ SC17

Univa

  • arrow
  • Click Here for More Headlines
  • arrow
Do NOT follow this link or you will be banned from the site!
Share This