NSF Project Sets Up First Machine Learning Cyberinfrastructure – CHASE-CI

By John Russell

July 25, 2017

Earlier this month, the National Science Foundation issued a $1 million grant to Larry Smarr, director of Calit2, and a group of his colleagues to create a community infrastructure in support of machine learning research. The ambitious plan – Cognitive Hardware and Software Ecosystem, Community Infrastructure (CHASE-CI) – is intended to leverage the high-speed Pacific Research Platform (PRP) and put fast GPU appliances into the hands of researchers to tackle machine learning hardware, software, and architecture issues.

Given the abrupt rise of machine learning and its distinct needs versus traditional FLOPS-dominated HPC, the CHASE-CI effort seems a natural next step in learning how to harness PRP’s high bandwidth for use with big data projects and machine learning. Perhaps not coincidentally Smarr is also principal investigator for PRP. As described in the NSF abstract, CHASE-CI “will build a cloud of hundreds of affordable Graphics Processing Units (GPUs), networked together with a variety of neural network machines to facilitate development of next generation cognitive computing.”

Those are big goals. Last week, Smarr and co-PI Thomas DeFanti spoke with HPCwire about the CHASE-CI project. It has many facets. Hardware, including von Neumann (vN) and non von Neumann (NvN) architectures, software frameworks (e.g., Caffe and TensorFlow), six specific algorithm families (details near the end of the article), and cost containment are all key target areas. In building out PRP, the effort leveraged existing optical networks such as GLIF by building termination devices based on PCs and providing them to research scientists. The new device — dubbed FIONA (Flexible I/O Network Appliances) – was developed by PRP co-PI Philip Papadopoulos and is critical to the new CHASE-CI effort. A little background on PRP may be helpful.

Larry Smarr, director, Calit2

As explained by Smarr, the basic PRP idea was to experiment with a cyberinfrastructure that was appropriate for a broad set of applications using big data that aren’t appropriate for the commodity internet because of the size of the of the datasets. To handle the high speed bandwidth, you need a big bucket at the end of the fiber notes Smarr. FIONAs filled the bill; the devices are stuffed with high performance, high capacity SSDs and high speed NICs but based on the humble and less expensive PC.

“They could take the high data rate without TCP backing up and thereby lowering the overall bandwidth, which traditionally has been a problem if you try to go directly to spinning disk,” says Smarr. Currently, there are on the order of 40 or 50 of these FIONAs deployed across the West Coast. Although 100 gigabit throughput is possible via the fiber, most researchers are getting 10 gigabit, still a big improvement.

DOE tests the PRP performance regularly using the visualization tool MaDDash (Monitoring and Debugging Dashboard). “There are test transfers of 10 gigabytes of data, four times a day, among 25 organizations, so that’s roughly about 300 transfers four times a day. The reason why we picked that number, 10 gigabytes, was because that’s the amount of data you need to get TCP up to full speed,” says Smarr.

Thomas DeFanti, co-PI, CHASE-CI

Networks are currently testing out at 5, 6, 7, 8 and 9 gigabits per second, which is nearly full utilization. “Some of them really nail it at 9.9 gigabits per second. If you go to 40 gigabit networks that we have, we are getting 13 and 14 gigabits per second and that’s because of the [constrained] software we are using. If we go to a different software, which is not what scientists routinely use [except] the high energy physics people, then we can get 30 or 40 or 100 gigabits per second – that’s where we max out with the PC architecture and the disk drives on those high end units,” explains DeFanti.

The PRP has proven to be very successful, say Smarr and DeFanti. PRP v1, basically the network of FIONAs, is complete. PRP v2 is in the works. The latter is intended to investigate advanced software concepts such as software defined networking and security and not intended to replace PRP v1. Now, Smarr wants to soup up FIONAs with FPGAs, hook them into the PRP, and tackle machine learning. And certainly hardware is just a portion of the machine learning challenge being addressed.

Data showing increase in PRP performance over time.

Like PRP before it, CHASE-CI is a response to an NSF call for community computer science infrastructure. Unlike PRP, which is focused on applications (e.g. geoscience, bioscience) and whose architecture was largely defined by guidance from domain scientists, CHASE-CI is being driven by needs of computer scientists trying to support big data and machine learning.

The full principal investigator team is an experienced and accomplished group including: Smarr, (Principal Investigator), Calit2; Tajana Rosing (Co-Principal Investigator), Professor, CSE Department, UCSD; Ilkay Altintas (Co-Principal Investigator), Chief Data Science Officer, San Diego Supercomputer Center; DeFanti (Co-Principal Investigator), Full Research Scientist at the UCSD Qualcomm Institute, a division of Calit2;  and Kenneth Kreutz-Delgado (Co-Principal Investigator), Professor, ECE Department, UCSD.

“What they didn’t ask for [in the PRP grant] was what computer scientists need to support big data and machine learning. So we went back to the campuses and found the computers scientists, faculty and staff that were working on machine learning and ended up with 30 of them that wrote up their research to put into this proposal,” says Smarr. “We asked what was bottlenecking the work and [they responded] it was a lack of access to GPUs to do the compute intensive aspects of machine learning like training data sets on big neural nets.”

Zeroing in on GPUs, particularly GPUs that emphasize lower precision, is perhaps predictable.

“[In traditional] HPC you need 64-bit and error correction and all of that kind of stuff which is provided very nicely by Nvidia’s Tesla line, for instance, but actually because of the noise that is inherent in the data in most machine learning applications it turns out that single precision 32-bit is just fine and that’s much less expensive than the double precision,” says Smarr. For this reason, the project is focusing on less expensive “gaming GPUs” which fit fine into the slots on the FIONAs since they are PCs.

The NSF proposal first called for putting ten GPUs into each FIONA. “But we decided eight is probably optimal, eight of these front line game GPUs and we are deploying 32 of those FIONAs in this new grant across PRP to these researchers, and because they are all connected at 10 gigabits/s we can essentially treat them as a cloud,” says Smarr. There are ten campuses initially participating: UC San Diego, UC Berkeley, UC Irvine, UC Riverside, UC Santa Cruz, UC Merced, Sand Diego State University, Caltech, Stanford, and Montana State University. [A brief summary of researchers and their intended focus by campus is at the end of the article (taken from the grant proposal).]

As shown in the cost comparison below, the premium for high end GPUs such as the Nvidia P100 is dramatic. The CHASE-CI plan is to stick with commodity gaming GPUs, like the Nvidia 1080, since they are used in large volumes which keeps the prices down and the improvements coming. Nevertheless Smarr and DeFanti emphasize they are vendor agnostic and that other vendors have expressed interest in the program.

“Every year Nvidia comes out with a new set of devices and then halfway way through the year they come out with an accelerated version so in some sense you are on a six month cycle. The game cards are around $600 and every year the [cost performance] gets better,” says DeFanti. “We buy what’s available, build, test, and benchmark and then we wait for the next round. [Notably], people in the community do have different needs – some need more memory, some would rather have twice as many $250 GPUs because they are really fast and just have less memory. So it is really kind of custom and there’s some negotiation with users, but they all fit in the same chassis.”

DeFanti argues the practice of simulating networks on CPUs has slowed machine learning’s growth. “Machine learning involves looking at gigabytes of data, millions of pictures, and basically doing that is a brute force calculation that works fine in 32 bit, nobody uses 64 bit. You chew on these things literally for a week even on a GPU, which is much faster than a CPU for these kind of these things. That’s a reason why this field was sort of sluggish just using simulators; it took too much time on desktop CPUs. The first phase of this revolution is getting everybody off simulators.”

That said, getting high performance GPUs into the hands of researchers and students is only half of the machine learning story. Training is hard and compute-intensive and can take weeks-to-months depending upon the problem. But once a network is trained, the computer power required for the inference engine is considerably less. Power consumption becomes the challenge particularly because these trained networks are expected to be widely deployed on mobile platforms.

Here, CHASE-CI is examining a wide range of device types and architectures. Calit2, for example, has been working with IBM’s neuromorphic True North chip for a couple of years. It also had a strong role in helping KnuEdge develop its DSP-based neural net chip. (KnuEdge, of course, was founded by former NASA administrator Daniel Goldin.) FPGAs also show promise.

Says Smarr, “They have got to be very energy efficient. You have this whole new generation of largely non von Neumann architectures that are capable of executing these machine learning algorithms on say streams of video data, radar data, LIDAR data, things like that, that make decisions in real time like approval on credit cards. We are building up a set of these different architectures – von Neumann and non von Neumann – and making those available to these 30 machine learning experts.”

CHASE-CI is also digging into the needed software ecosystem to support machine learning. The grant states “representative algorithms from each of the following six families will be selected to form a standardized core suite of ‘component algorithms’ that have been tuned for optimal performance on the component coprocessors.” Here they are:

  • Deep Neural Network (DNN) and Recurrent Neural Network (RNN) algorithms, including layered networks having fully-connected and convolutional layers (CNNs), variational autoencoders (VAEs), and generalized adversarial networks (GANs). Training will be done using, modern approaches to backpropagation, stochastic sampling, bootstrap sampling, and restricted (and unrestricted) Boltzmann ML. NNs provide powerful classification and detection performance and can automatically extract a hierarchy of features.
  • Reinforcement Learning (RL) algorithms and related approximate Markov decision process (MDP) algorithms. RL and inverse-RL algorithms have critical applications in areas of dynamic decision-making, robotics and human/robotic transfer learning.
  • Variational Autoencoder (VAE) and Markov Chain Monte Carlo (MCMC) stochastic sampling algorithms supporting the training of generative models and metrics for evaluating the quality of generative model algorithms. Stochastic sampling algorithms are appropriate for training generative models on analog and digital spiking neurons. Novel metrics are appropriate.
  • Support Vector Machine (SVM) SVMs can perform an inner product and thresholding in a high-dimensional feature space via use of the “kernel trick”.
  • Sparse Signal Processing (SSP) algorithms for sparse signal processing and compressive sensing, including Sparse Baysian Learning (SBL). Algorithms which exploit source sparsity, possibly using learned over-complete dictionaries, are very important in domains such as medical image processing and brain-computing interfacing.
  • Latent Variable (LVA) Algorithms for source separation algorithms, such as PCA, ICA, and IVA. LV models typically assume that a solution exists in some latent variable sparse within which the components are statistically independent. This class of algorithms includes factor analysis (FA) and non-negative matrix factorization (NMF) algorithms.

Despite such ambitious hardware and software goals, Smarr suggests early results from CHASE-CI should be available sometime in the fall. Don’t get the wrong idea, he cautions. CHASE-CI is a research project for computer science not a production platform.

“We are not trying to be a big production site or anything else. But we are trying to really explore, as this field develops, not just the hardware platforms we’ve talked about but the software and algorithm issues. There’s a whole bunch of different modes of machine learning and statistical analysis that we are trying to match between the algorithms and the architectures, both von Neumann and non von Neumann.

“For 30 years I have been sort of collecting architectures and mapping a wide swath of algorithms on them to port applications. Here we are doing it again but now for machine learning.”

Sample List of CHASE-CI Researchers and Area of Work*

  • UC San Diego: Ravi Ramamoorthi (ML for processing light field imagery), Manmohan Chandraker (3D scene reconstruction), Arun Kumar (deep learning for database systems), Rajesh Gupta (accelerator-centric SOCs), Gary Cottrell (comp. cognitive neuroscience & computer vision), Nuno Vasconcelos (computer vision & ML), Todd Hylton (contextual robotics), Jurgen Schulze (VR), Ken Kreutz-Delgado (ML and NvN), Larry Smarr (ML and microbiome), Tajana Rosing (energy efficiency of running MLs on NvNs), Falko Kuester (ML on NvNs in drones).
  • UC Berkeley: James Demmel (CA algorithms), Trevor Darrell (ML libraries)
  • UC Irvine: Padhraic Smyth (ML for biomedicine and climate science), Jeffrey Krichmar 
(computational neuroscience), Nikkil Dutt (FPGAs), Anima Anandkumar (ML)
  • UC Riverside: Walid Najjar (FPGAs), Amit Roy-Chowdhury (image and video analysis)
  • UC Santa Cruz: Dimitris Achlioptas (linear layers and random bipartite graphs), Lise Getoor (large-scale graph processing), Ramakrishna Akella (multi-modal prediction and retrieval), Shawfeng Dong (Bayesian deep learning and CNN models in astronomy)
  • UC Merced: Yang Quan Chen (agricultural drones)
  • San Diego State: Baris Aksanli (adaptive learning for historical data)
  • Caltech: Yisong Yue (scalable deep learning methods for complex prediction settings)
  • Stanford: Anshul Kundaje (ML & genetics), Ron Dror (structure-based drug design using ML)
  • Montana State: John Sheppard (ML and probablistic methods to solve large systems problems)

*  Excerpted from the CHASE-CI grant proposal

Images courtesy of Larry Smarr, Calit2

Subscribe to HPCwire's Weekly Update!

Be the most informed person in the room! Stay ahead of the tech trends with industy updates delivered to you every week!

InfiniBand Still Tops in Supercomputing

July 19, 2018

In the competitive global HPC landscape, system and processor vendors, nations and end user sites certainly get a lot of attention--deservedly so--but more than ever, the network plays a crucial role. While fast, perform Read more…

By Tiffany Trader

HPC for Life: Genomics, Brain Research, and Beyond

July 19, 2018

During the past few decades, the life sciences have witnessed one landmark discovery after another with the aid of HPC, paving the way toward a new era of personalized treatments based on an individual’s genetic makeup Read more…

By Warren Froelich

WCRP’s New Strategic Plan for Climate Research Highlights the Importance of HPC

July 19, 2018

As climate modeling increasingly leverages exascale computing and researchers warn of an impending computing gap in climate research, the World Climate Research Programme (WCRP) is developing its new Strategic Plan – and high-performance computing is slated to play a critical role. Read more…

By Oliver Peckham

HPE Extreme Performance Solutions

Introducing the First Integrated System Management Software for HPC Clusters from HPE

How do you manage your complex, growing cluster environments? Answer that big challenge with the new HPC cluster management solution: HPE Performance Cluster Manager. Read more…

IBM Accelerated Insights

Are Your Software Licenses Impeding Your Productivity?

In my previous article, Improving chip yield rates with cognitive manufacturing, I highlighted the costs associated with semiconductor manufacturing, and how cognitive methods can yield benefits in both design and manufacture.  Read more…

U.S. Exascale Computing Project Releases Software Technology Progress Report

July 19, 2018

As is often noted the race to exascale computing isn’t just about hardware. This week the U.S. Exascale Computing Project (ECP) released its latest Software Technology (ST) Capability Assessment Report detailing progress so far. Read more…

By John Russell

InfiniBand Still Tops in Supercomputing

July 19, 2018

In the competitive global HPC landscape, system and processor vendors, nations and end user sites certainly get a lot of attention--deservedly so--but more than Read more…

By Tiffany Trader

HPC for Life: Genomics, Brain Research, and Beyond

July 19, 2018

During the past few decades, the life sciences have witnessed one landmark discovery after another with the aid of HPC, paving the way toward a new era of perso Read more…

By Warren Froelich

D-Wave Breaks New Ground in Quantum Simulation

July 16, 2018

Last Friday D-Wave scientists and colleagues published work in Science which they say represents the first fulfillment of Richard Feynman’s 1982 notion that Read more…

By John Russell

AI Thought Leaders on Capitol Hill

July 14, 2018

On Thursday, July 12, the House Committee on Science, Space, and Technology heard from four academic and industry leaders – representatives from Berkeley Lab, Argonne Lab, GE Global Research and Carnegie Mellon University – on the opportunities springing from the intersection of machine learning and advanced-scale computing. Read more…

By Tiffany Trader

HPC Serves as a ‘Rosetta Stone’ for the Information Age

July 12, 2018

In an age defined and transformed by its data, several large-scale scientific instruments around the globe might be viewed as a ‘mother lode’ of precious data. With names seemingly created for a ‘techno-speak’ glossary, these interferometers, cyclotrons, sequencers, solenoids, satellite altimeters, and cryo-electron microscopes are churning out data in previously unthinkable and seemingly incomprehensible quantities -- billions, trillions and quadrillions of bits and bytes of electro-magnetic code. Read more…

By Warren Froelich

Tsinghua Powers Through ISC18 Field

July 10, 2018

Tsinghua University topped all other competitors at the ISC18 Student Cluster Competition with an overall score of 88.43 out of 100. This gives Tsinghua their s Read more…

By Dan Olds

HPE, EPFL Launch Blue Brain 5 Supercomputer

July 10, 2018

HPE and the Ecole Polytechnique Federale de Lausannne (EPFL) Blue Brain Project yesterday introduced Blue Brain 5, a new supercomputer built by HPE, which displ Read more…

By John Russell

Pumping New Life into HPC Clusters, the Case for Liquid Cooling

July 10, 2018

High Performance Computing (HPC) faces some daunting challenges in the coming years as traditional, industry-standard systems push the boundaries of data center Read more…

By Scott Tease

Leading Solution Providers

SC17 Booth Video Tours Playlist

Altair @ SC17


AMD @ SC17


ASRock Rack @ SC17

ASRock Rack



DDN Storage @ SC17

DDN Storage

Huawei @ SC17


IBM @ SC17


IBM Power Systems @ SC17

IBM Power Systems

Intel @ SC17


Lenovo @ SC17


Mellanox Technologies @ SC17

Mellanox Technologies

Microsoft @ SC17


Penguin Computing @ SC17

Penguin Computing

Pure Storage @ SC17

Pure Storage

Supericro @ SC17


Tyan @ SC17


Univa @ SC17


  • arrow
  • Click Here for More Headlines
  • arrow
Do NOT follow this link or you will be banned from the site!
Share This