Children’s Mercy Kansas City Utilizing DDN Storage

June 22, 2016

SANTA CLARA, Calif., June 22 — DataDirect Networks (DDN) today announced that Children’s Mercy Kansas City is transforming children’s lives and redefining pediatric medicine with an incredibly innovative genomics approach powered by DDN storage. The hospital has deployed DDN’s GS7K with 1PB of storage to speed patient diagnosis and disease treatments by fueling compute and data-intensive research from the world’s first whole genome sequencing center in a pediatric setting.

At the hospital’s Center for Pediatric Genomic Medicine, physicians collaborate with clinical laboratory scientists, molecular geneticists, bioinformaticians and software engineers to sequence and analyze rare inherited diseases. Recognized as a pediatric genomics pioneer, Children’s Mercy previously set the standard for decoding a genome in about two days—a process that traditionally took six weeks or longer. The hospital now is applying advanced compute, DDN storage and accelerated sequencing technologies to reach its goal of completing the process and delivering results to physicians in 26 hours.

According to Shane Corder, HPC systems engineer, Center for Pediatric Genomic Medicine at Children’s Mercy, rapid genome sequencing can be the key to diagnosing critically ill patients and prescribing viable treatments faster and more effectively. “Genomic sequencing, coupled with high-performance computing and DDN storage, gives us a whole new look at medicine by quickly shedding light on DNA variations that can explain a child’s condition,” he explains. “Our focus on developing clinical tests for next-generation medical treatments improves outcomes for patients at Children’s Mercy and around the world.”

In particular, time is of the essence when decoding genomes of seriously ill children to find genetic causes of their illnesses and end typically arduous and often painful diagnostic journeys. Dealing with massive amounts of data is exceedingly difficult as a person’s DNA has more than 6.4 million bases, encompassing 22,000 genes that code for 100,000 proteins. To remove bottlenecks in its clinical and research environments, Children’s Mercy sought a powerful storage solution to address the constant data deluge while enabling scientists to quickly analyze data and produce meaningful genome testing results.

With DDN’s high-performance GRIDScaler platform, Children’s Mercy can scale up or out to handle massive data ingest, processing, storage and collaboration. Not only does DDN deliver performance and scalability unmatched by traditional scale-out, enterprise NAS architectures, the GS7K meets the Center’s imposing requirements for a high-density, cost-effective solution.

Thanks to DDN, Children’s Mercy has dramatically improved its ability to align, analyze and discover data as the storage platform seamlessly supports the Center’s Nordic suite of software tools. For example, the time to perform the Center’s well-known STAT-Seq rapid genome test has been reduced by about 43 percent, or from 2.5 to 1.75 hours. Ingest on Children’s Mercy’s Illumina sequencers also has increased substantially. Together, these performance improvements will enable Children’s Mercy to break the time barrier for decoding a full genome.

“We’re trying hard to break the 48-hour window required for the crucial STAT-Seq test by applying advanced compute, storage and accelerated sequencing technologies,” Corder says. “The goal is to complete the entire process from enrollment to delivering a final report to the physician in 26 hours.” Additionally, DDN’s storage will be able to seamlessly support the Center’s planned deployment of the Edico DRAGEN Bio-IT processor, which is an FPGA-based genomic analysis acceleration technique.

About DDN

DataDirect Networks (DDN) is the world’s leading big data storage supplier to data-intensive, global organizations. For more than 15 years, DDN storage has designed, developed, deployed and optimized systems, software and storage solutions that enable enterprises, service providers, universities and government agencies to generate more value and to accelerate time to insight from their data and information, on premise and in the cloud. Organizations leverage the power of DDN storage technology and the deep technical expertise of its team to capture, store, process, analyze, collaborate and distribute data, information and content at largest scale in the most efficient, reliable and cost effective manner. DDN customers include many of the world’s leading financial services firms and banks, healthcare and life science organizations, manufacturing and energy companies, government and research facilities, and web and cloud service providers. For more information, go to www.ddn.com or call 1-800-837-2298.

About Children’s Mercy Kansas City

Located in Kansas City, Mo., Children’s Mercy is one of the nation’s top pediatric medical centers. The 354-bed, not-for-profit hospital provides care for children from birth through the age of 21, and is ranked by U.S. News & World Report as one of “America’s Best Children’s Hospitals.” For the fourth time in a row, Children’s Mercy has achieved Magnet nursing designation, awarded to fewer than seven percent of all hospitals nationally, for excellence in quality care. Its faculty of more than 700 pediatric subspecialists and researchers across more than 40 subspecialties are actively involved in clinical care, pediatric research, and educating the next generation of pediatric subspecialists. With more than a century of generous philanthropic and volunteer support, Children’s Mercy has provided the highest level of medical care to every child who passes through its doors, regardless of a family’s ability to pay. For more information about Children’s Mercy and its research, visit childrensmercy.org. For breaking news and videos, follow us on TwitterYouTube and Facebook.


Source: DDN

Subscribe to HPCwire's Weekly Update!

Be the most informed person in the room! Stay ahead of the tech trends with industry updates delivered to you every week!

Kathy Yelick on Post-Exascale Challenges

April 18, 2024

With the exascale era underway, the HPC community is already turning its attention to zettascale computing, the next of the 1,000-fold performance leaps that have occurred about once a decade. With this in mind, the ISC Read more…

2024 Winter Classic: Texas Two Step

April 18, 2024

Texas Tech University. Their middle name is ‘tech’, so it’s no surprise that they’ve been fielding not one, but two teams in the last three Winter Classic cluster competitions. Their teams, dubbed Matador and Red Read more…

2024 Winter Classic: The Return of Team Fayetteville

April 18, 2024

Hailing from Fayetteville, NC, Fayetteville State University stayed under the radar in their first Winter Classic competition in 2022. Solid students for sure, but not a lot of HPC experience. All good. They didn’t Read more…

Software Specialist Horizon Quantum to Build First-of-a-Kind Hardware Testbed

April 18, 2024

Horizon Quantum Computing, a Singapore-based quantum software start-up, announced today it would build its own testbed of quantum computers, starting with use of Rigetti’s Novera 9-qubit QPU. The approach by a quantum Read more…

2024 Winter Classic: Meet Team Morehouse

April 17, 2024

Morehouse College? The university is well-known for their long list of illustrious graduates, the rigor of their academics, and the quality of the instruction. They were one of the first schools to sign up for the Winter Read more…

MLCommons Launches New AI Safety Benchmark Initiative

April 16, 2024

MLCommons, organizer of the popular MLPerf benchmarking exercises (training and inference), is starting a new effort to benchmark AI Safety, one of the most pressing needs and hurdles to widespread AI adoption. The sudde Read more…

Kathy Yelick on Post-Exascale Challenges

April 18, 2024

With the exascale era underway, the HPC community is already turning its attention to zettascale computing, the next of the 1,000-fold performance leaps that ha Read more…

Software Specialist Horizon Quantum to Build First-of-a-Kind Hardware Testbed

April 18, 2024

Horizon Quantum Computing, a Singapore-based quantum software start-up, announced today it would build its own testbed of quantum computers, starting with use o Read more…

MLCommons Launches New AI Safety Benchmark Initiative

April 16, 2024

MLCommons, organizer of the popular MLPerf benchmarking exercises (training and inference), is starting a new effort to benchmark AI Safety, one of the most pre Read more…

Exciting Updates From Stanford HAI’s Seventh Annual AI Index Report

April 15, 2024

As the AI revolution marches on, it is vital to continually reassess how this technology is reshaping our world. To that end, researchers at Stanford’s Instit Read more…

Intel’s Vision Advantage: Chips Are Available Off-the-Shelf

April 11, 2024

The chip market is facing a crisis: chip development is now concentrated in the hands of the few. A confluence of events this week reminded us how few chips Read more…

The VC View: Quantonation’s Deep Dive into Funding Quantum Start-ups

April 11, 2024

Yesterday Quantonation — which promotes itself as a one-of-a-kind venture capital (VC) company specializing in quantum science and deep physics  — announce Read more…

Nvidia’s GTC Is the New Intel IDF

April 9, 2024

After many years, Nvidia's GPU Technology Conference (GTC) was back in person and has become the conference for those who care about semiconductors and AI. I Read more…

Google Announces Homegrown ARM-based CPUs 

April 9, 2024

Google sprang a surprise at the ongoing Google Next Cloud conference by introducing its own ARM-based CPU called Axion, which will be offered to customers in it Read more…

Nvidia H100: Are 550,000 GPUs Enough for This Year?

August 17, 2023

The GPU Squeeze continues to place a premium on Nvidia H100 GPUs. In a recent Financial Times article, Nvidia reports that it expects to ship 550,000 of its lat Read more…

Synopsys Eats Ansys: Does HPC Get Indigestion?

February 8, 2024

Recently, it was announced that Synopsys is buying HPC tool developer Ansys. Started in Pittsburgh, Pa., in 1970 as Swanson Analysis Systems, Inc. (SASI) by John Swanson (and eventually renamed), Ansys serves the CAE (Computer Aided Engineering)/multiphysics engineering simulation market. Read more…

Intel’s Server and PC Chip Development Will Blur After 2025

January 15, 2024

Intel's dealing with much more than chip rivals breathing down its neck; it is simultaneously integrating a bevy of new technologies such as chiplets, artificia Read more…

Choosing the Right GPU for LLM Inference and Training

December 11, 2023

Accelerating the training and inference processes of deep learning models is crucial for unleashing their true potential and NVIDIA GPUs have emerged as a game- Read more…

Baidu Exits Quantum, Closely Following Alibaba’s Earlier Move

January 5, 2024

Reuters reported this week that Baidu, China’s giant e-commerce and services provider, is exiting the quantum computing development arena. Reuters reported � Read more…

Comparing NVIDIA A100 and NVIDIA L40S: Which GPU is Ideal for AI and Graphics-Intensive Workloads?

October 30, 2023

With long lead times for the NVIDIA H100 and A100 GPUs, many organizations are looking at the new NVIDIA L40S GPU, which it’s a new GPU optimized for AI and g Read more…

Shutterstock 1179408610

Google Addresses the Mysteries of Its Hypercomputer 

December 28, 2023

When Google launched its Hypercomputer earlier this month (December 2023), the first reaction was, "Say what?" It turns out that the Hypercomputer is Google's t Read more…

AMD MI3000A

How AMD May Get Across the CUDA Moat

October 5, 2023

When discussing GenAI, the term "GPU" almost always enters the conversation and the topic often moves toward performance and access. Interestingly, the word "GPU" is assumed to mean "Nvidia" products. (As an aside, the popular Nvidia hardware used in GenAI are not technically... Read more…

Leading Solution Providers

Contributors

Shutterstock 1606064203

Meta’s Zuckerberg Puts Its AI Future in the Hands of 600,000 GPUs

January 25, 2024

In under two minutes, Meta's CEO, Mark Zuckerberg, laid out the company's AI plans, which included a plan to build an artificial intelligence system with the eq Read more…

China Is All In on a RISC-V Future

January 8, 2024

The state of RISC-V in China was discussed in a recent report released by the Jamestown Foundation, a Washington, D.C.-based think tank. The report, entitled "E Read more…

Shutterstock 1285747942

AMD’s Horsepower-packed MI300X GPU Beats Nvidia’s Upcoming H200

December 7, 2023

AMD and Nvidia are locked in an AI performance battle – much like the gaming GPU performance clash the companies have waged for decades. AMD has claimed it Read more…

DoD Takes a Long View of Quantum Computing

December 19, 2023

Given the large sums tied to expensive weapon systems – think $100-million-plus per F-35 fighter – it’s easy to forget the U.S. Department of Defense is a Read more…

Nvidia’s New Blackwell GPU Can Train AI Models with Trillions of Parameters

March 18, 2024

Nvidia's latest and fastest GPU, codenamed Blackwell, is here and will underpin the company's AI plans this year. The chip offers performance improvements from Read more…

Eyes on the Quantum Prize – D-Wave Says its Time is Now

January 30, 2024

Early quantum computing pioneer D-Wave again asserted – that at least for D-Wave – the commercial quantum era has begun. Speaking at its first in-person Ana Read more…

GenAI Having Major Impact on Data Culture, Survey Says

February 21, 2024

While 2023 was the year of GenAI, the adoption rates for GenAI did not match expectations. Most organizations are continuing to invest in GenAI but are yet to Read more…

The GenAI Datacenter Squeeze Is Here

February 1, 2024

The immediate effect of the GenAI GPU Squeeze was to reduce availability, either direct purchase or cloud access, increase cost, and push demand through the roof. A secondary issue has been developing over the last several years. Even though your organization secured several racks... Read more…

  • arrow
  • Click Here for More Headlines
  • arrow
HPCwire