ESnet’s Science DMZ Design Could Help Transfer, Protect Medical Research Data

October 17, 2017

Oct. 17, 2017 — Like other sciences, medical research is generating increasingly large datasets as doctors track health trends, the spread of diseases, genetic causes of illness and the like. Effectively using this data for efforts ranging from stopping the spread of deadly viruses to creating precision medicine treatments for individuals will be greatly accelerated by the secure sharing of the data, while also protecting individual privacy.

In a paper published Friday, Oct. 6 by the Journal of the American Medical Informatics Association, a group of researchers led by Sean Peisert of the Department of Energy’s (DOE) Lawrence Berkeley National Laboratory (Berkeley Lab) wrote that the Science DMZ architecture developed for moving large data sets quick and securely could be adapted to meet the needs of the medical research community.

The Science DMZ traces its name to an element of network security architecture. Typically, located at the network perimeter, a DMZ has its own security policy because of its dedicated purpose – exchanging data with the outside world.

Exponentially increasing amounts of data from genomics, high quality imaging and other clinical data sets could provide valuable resources for preventing and treating medical conditions. But unlike most scientific data, medical information is subject to strict privacy protections under the Health Insurance Portability and Accountability Act (HIPAA) so any sharing of data must ensure that these protections are met.

Image courtesy of Lawrence Berkeley National Lab.

“You can’t just take the medical data from one site and drop it straight in to another site because of the policy constraints on that data,” said Eli Dart, a network engineer at the Department of Energy’s Energy Sciences Network (ESnet) who is a co-author of the paper. “But as members of a society, our health could benefit if the medical science community can become more productive in terms of accessing relevant data.”

For example, an authenticated user could query a very large data base stored at multiple sites to learn more about an emerging medical issue, such as the appearance of a new virus, said Peisert, who works in Berkeley Lab’s Computational Research Division. In this way, teams of widely dispersed experts could collaborate in real-time to address the problem.

According to the authors of the paper, the storage, analysis and network resources needed to handle the data and integrate it into patient diagnoses and treatments have grown so much that they strain the capabilities of academic health centers. At the same time, shared data repositories like those at the National Library of Medicine, the National Cancer Institute and international partners such as the European Bioinformatics Institute are rapidly growing.

“But by implementing a Medical Science DMZ architecture, we believe biomedical researchers can leverage the scale provided by high performance computer and cloud storage facilities and national high-speed research networks while preserving privacy and meeting regulatory requirements,” Peisert said. “Access would of course need to be properly authenticated, but unlocking the world’s medical information could yield enormous benefits.”

The authors define a “Medical Science DMZ” as “a method or approach that allows data flows at scale while simultaneously addressing the HIPAA Security Rule and related regulations governing biomedical data and appropriately managing risk.” Their network design pattern addresses Big Data and can be implemented using a combination of physical, administrative and technical safeguards.

The paper was written as the National Institutes of Health (NIH) are spearheading a “Commons Initiative” for sharing data; the NIH have long provided reference data through the National Library of Medicine. The National Cancer Institute funded a number of pilot projects to use cloud computing for cancer genomics in 2016, and the initiative has since continued and expanded beyond the pilot phase.s. Many universities with high-performance computing facilities available are increasingly applying their capacity to biomedical research.

The Science DMZ network architecture, which is used by more than 100 research institutions across the country, provides speed and security for moving large data sets. Dart led the development of the Science DMZ concept, formalized it in 2010, and has been helping organizations deploy it ever since.

A Science DMZ is specifically dedicated to external-facing high-performance science services and is separate from an organization’s production network, which allows bulk science data transfers to be secured without inheriting the performance limitations of the infrastructure used to defend enterprise applications.

Data transfers using Science DMZs are straightforward from a network security perspective: the data transfer nodes (specially tuned servers) exchange security credentials to authenticate the transfer and then open several connections to move the specified data. One the job is completed, the connections close down. In the case of moving medical data, the information is encrypted both while it is being stored and while it’s moving across the network.

“There’s no magic,” Dart said. “The security is easy to manage in that the sites are known entities and nothing moves without proper security credentials.”

In fact, Dart said, such transfers pose less of a security problem than surfing the web on a personal computer connected to an open network. When someone browses a web site, the user’s computer downloads content from many different locations as specified by the web page, including ads that are sold and resold by firms around the world and may contain malware or other security threats. A data transfer between Science DMZs is a comparatively simple operation that doesn’t involve image rendering or media players (which are common attack surfaces), and only transfers data from approved endpoints.

In their paper, the authors present the details of three implementations and describe how they balance the key aspects of a Medical Science DMZ of high-throughput and regulatory compliance. Indiana University, Harvard University, and the University of Chicago all use a non-firewalled approach to moving HIPAA-protected data in their Medical Science DMZs. Each site has implemented frameworks that allow free flow of data where needed and address HIPAA using alternate, reasonable and appropriate controls that manage risk.

In each case the data transfers are encrypted, and can only be initiated by authenticated and authorized users. The interactive network traffic needed to initiate such transfers still passes through one or more systems that are heavily protected and monitored. Although firewalls are not removed entirely from the system, they are used intelligently and overall system security is maintained while still permitting the transfer of sensitive data, such as large biomedical datasets.

“We wrote this paper as a starting point,” Peisert said, “and hope that it will allow a lot of great things to happen.”

ESnet is a DOE Office of Science User Facility. DOE’s Office of Science is the single largest supporter of basic research in the physical sciences in the United States, and is working to address some of the most pressing challenges of our time.


Source: Lawrence Berkeley National Laboratory

Subscribe to HPCwire's Weekly Update!

Be the most informed person in the room! Stay ahead of the tech trends with industry updates delivered to you every week!

AI Saves the Planet this Earth Day

April 22, 2024

Earth Day was originally conceived as a day of reflection. Our planet’s life-sustaining properties are unlike any other celestial body that we’ve observed, and this day of contemplation is meant to provide all of us Read more…

Intel Announces Hala Point – World’s Largest Neuromorphic System for Sustainable AI

April 22, 2024

As we find ourselves on the brink of a technological revolution, the need for efficient and sustainable computing solutions has never been more critical.  A computer system that can mimic the way humans process and s Read more…

Empowering High-Performance Computing for Artificial Intelligence

April 19, 2024

Artificial intelligence (AI) presents some of the most challenging demands in information technology, especially concerning computing power and data movement. As a result of these challenges, high-performance computing Read more…

Kathy Yelick on Post-Exascale Challenges

April 18, 2024

With the exascale era underway, the HPC community is already turning its attention to zettascale computing, the next of the 1,000-fold performance leaps that have occurred about once a decade. With this in mind, the ISC Read more…

2024 Winter Classic: Texas Two Step

April 18, 2024

Texas Tech University. Their middle name is ‘tech’, so it’s no surprise that they’ve been fielding not one, but two teams in the last three Winter Classic cluster competitions. Their teams, dubbed Matador and Red Read more…

2024 Winter Classic: The Return of Team Fayetteville

April 18, 2024

Hailing from Fayetteville, NC, Fayetteville State University stayed under the radar in their first Winter Classic competition in 2022. Solid students for sure, but not a lot of HPC experience. All good. They didn’t Read more…

AI Saves the Planet this Earth Day

April 22, 2024

Earth Day was originally conceived as a day of reflection. Our planet’s life-sustaining properties are unlike any other celestial body that we’ve observed, Read more…

Kathy Yelick on Post-Exascale Challenges

April 18, 2024

With the exascale era underway, the HPC community is already turning its attention to zettascale computing, the next of the 1,000-fold performance leaps that ha Read more…

Software Specialist Horizon Quantum to Build First-of-a-Kind Hardware Testbed

April 18, 2024

Horizon Quantum Computing, a Singapore-based quantum software start-up, announced today it would build its own testbed of quantum computers, starting with use o Read more…

MLCommons Launches New AI Safety Benchmark Initiative

April 16, 2024

MLCommons, organizer of the popular MLPerf benchmarking exercises (training and inference), is starting a new effort to benchmark AI Safety, one of the most pre Read more…

Exciting Updates From Stanford HAI’s Seventh Annual AI Index Report

April 15, 2024

As the AI revolution marches on, it is vital to continually reassess how this technology is reshaping our world. To that end, researchers at Stanford’s Instit Read more…

Intel’s Vision Advantage: Chips Are Available Off-the-Shelf

April 11, 2024

The chip market is facing a crisis: chip development is now concentrated in the hands of the few. A confluence of events this week reminded us how few chips Read more…

The VC View: Quantonation’s Deep Dive into Funding Quantum Start-ups

April 11, 2024

Yesterday Quantonation — which promotes itself as a one-of-a-kind venture capital (VC) company specializing in quantum science and deep physics  — announce Read more…

Nvidia’s GTC Is the New Intel IDF

April 9, 2024

After many years, Nvidia's GPU Technology Conference (GTC) was back in person and has become the conference for those who care about semiconductors and AI. I Read more…

Nvidia H100: Are 550,000 GPUs Enough for This Year?

August 17, 2023

The GPU Squeeze continues to place a premium on Nvidia H100 GPUs. In a recent Financial Times article, Nvidia reports that it expects to ship 550,000 of its lat Read more…

Synopsys Eats Ansys: Does HPC Get Indigestion?

February 8, 2024

Recently, it was announced that Synopsys is buying HPC tool developer Ansys. Started in Pittsburgh, Pa., in 1970 as Swanson Analysis Systems, Inc. (SASI) by John Swanson (and eventually renamed), Ansys serves the CAE (Computer Aided Engineering)/multiphysics engineering simulation market. Read more…

Intel’s Server and PC Chip Development Will Blur After 2025

January 15, 2024

Intel's dealing with much more than chip rivals breathing down its neck; it is simultaneously integrating a bevy of new technologies such as chiplets, artificia Read more…

Choosing the Right GPU for LLM Inference and Training

December 11, 2023

Accelerating the training and inference processes of deep learning models is crucial for unleashing their true potential and NVIDIA GPUs have emerged as a game- Read more…

Baidu Exits Quantum, Closely Following Alibaba’s Earlier Move

January 5, 2024

Reuters reported this week that Baidu, China’s giant e-commerce and services provider, is exiting the quantum computing development arena. Reuters reported � Read more…

Comparing NVIDIA A100 and NVIDIA L40S: Which GPU is Ideal for AI and Graphics-Intensive Workloads?

October 30, 2023

With long lead times for the NVIDIA H100 and A100 GPUs, many organizations are looking at the new NVIDIA L40S GPU, which it’s a new GPU optimized for AI and g Read more…

Shutterstock 1179408610

Google Addresses the Mysteries of Its Hypercomputer 

December 28, 2023

When Google launched its Hypercomputer earlier this month (December 2023), the first reaction was, "Say what?" It turns out that the Hypercomputer is Google's t Read more…

AMD MI3000A

How AMD May Get Across the CUDA Moat

October 5, 2023

When discussing GenAI, the term "GPU" almost always enters the conversation and the topic often moves toward performance and access. Interestingly, the word "GPU" is assumed to mean "Nvidia" products. (As an aside, the popular Nvidia hardware used in GenAI are not technically... Read more…

Leading Solution Providers

Contributors

Shutterstock 1606064203

Meta’s Zuckerberg Puts Its AI Future in the Hands of 600,000 GPUs

January 25, 2024

In under two minutes, Meta's CEO, Mark Zuckerberg, laid out the company's AI plans, which included a plan to build an artificial intelligence system with the eq Read more…

China Is All In on a RISC-V Future

January 8, 2024

The state of RISC-V in China was discussed in a recent report released by the Jamestown Foundation, a Washington, D.C.-based think tank. The report, entitled "E Read more…

Shutterstock 1285747942

AMD’s Horsepower-packed MI300X GPU Beats Nvidia’s Upcoming H200

December 7, 2023

AMD and Nvidia are locked in an AI performance battle – much like the gaming GPU performance clash the companies have waged for decades. AMD has claimed it Read more…

Nvidia’s New Blackwell GPU Can Train AI Models with Trillions of Parameters

March 18, 2024

Nvidia's latest and fastest GPU, codenamed Blackwell, is here and will underpin the company's AI plans this year. The chip offers performance improvements from Read more…

Eyes on the Quantum Prize – D-Wave Says its Time is Now

January 30, 2024

Early quantum computing pioneer D-Wave again asserted – that at least for D-Wave – the commercial quantum era has begun. Speaking at its first in-person Ana Read more…

GenAI Having Major Impact on Data Culture, Survey Says

February 21, 2024

While 2023 was the year of GenAI, the adoption rates for GenAI did not match expectations. Most organizations are continuing to invest in GenAI but are yet to Read more…

The GenAI Datacenter Squeeze Is Here

February 1, 2024

The immediate effect of the GenAI GPU Squeeze was to reduce availability, either direct purchase or cloud access, increase cost, and push demand through the roof. A secondary issue has been developing over the last several years. Even though your organization secured several racks... Read more…

Intel’s Xeon General Manager Talks about Server Chips 

January 2, 2024

Intel is talking data-center growth and is done digging graves for its dead enterprise products, including GPUs, storage, and networking products, which fell to Read more…

  • arrow
  • Click Here for More Headlines
  • arrow
HPCwire