Flatiron Institute to Repurpose SDSC’s Gordon Supercomputer

March 16, 2017

SAN DIEGO, Calif., March 16, 2017 — The San Diego Supercomputer Center (SDSC) at the University of California San Diego and the  Simons Foundation’s Flatiron Institute in New York have reached an agreement under which the majority of SDSC’s data-intensive Gordon supercomputer will be used by Simons for ongoing research following completion of the system’s tenure as a National Science Foundation (NSF) resource on March 31.

Under the agreement, SDSC will provide high-performance computing (HPC) resources and services on Gordon for the Flatiron Institute to conduct computationally-based research in astrophysics, biology, condensed matter physics, materials science, and other domains. The two-year agreement, with an option to renew for a third year, takes effect April 1, 2017.

Under the agreement, the Flatiron Institute will have annual access to at least 90 percent of Gordon’s system capacity. SDSC will retain the rest for use by other organizations including UC San Diego’s Center for Astrophysics & Space Sciences (CASS), as well as SDSC’s OpenTopography project and various projects within the Center for Applied Internet Data Analysis (CAIDA), which is based at SDSC.

“We are delighted that the Simons Foundation has given Gordon a new lease on life after five years of service as a highly sought after XSEDE resource,” said SDSC Director Michael Norman, who also served as the principal investigator for Gordon. “We welcome the Foundation as a new partner and consider this to be a solid testimony regarding Gordon’s data-intensive capabilities and its myriad contributions to advancing scientific discovery.”

“We are excited to have a big boost to the processing capacity for our researchers and to work with the strong team from San Diego,” said Ian Fisk, co-director of the Scientific Computing Core (SCC), which is part of the Flatiron Institute.

David Spergel, director of the Flatiron Institute’s Center for Computational Astrophysics (CCA) said, “CCA researchers will use Gordon both for simulating the evolution and growth of galaxies, as well as for the analysis of large astronomical data sets.  Gordon offers us a powerful platform for attacking these challenging computational problems.”

Simons Array and Simons Observatory

The POLARBEAR project and successor project called The Simons Array, led by UC Berkeley and funded first by the Simons Foundation and then in 2015 by the NSF under a five-year, $5 million grant, will continue to use Gordon as a key resource.

“POLARBEAR and The Simons Array, which will deploy the most powerful CMB (Cosmic Microwave Background) radiation telescope and detector system ever made, are two NSF supported astronomical telescopes that observe CMB, in essence the leftover ‘heat’ from the Big Bang in the form of microwave radiation,” said Brian Keating, a professor of physics at UC San Diego’s Center for Astrophysics & Space Sciences and a co-PI for the POLARBEAR/Simons Array project.

“The POLARBEAR experiment alone collects nearly one gigabyte of data every day that must be analyzed in real time,” added Keating. “This is an intensive process that requires dozens of sophisticated tests to assure the quality of the data. Only by leveraging resources such as Gordon are we be able to continue our legacy of success.”

Gordon also will be used in conjunction with the Simons Observatory, a 5-year $40 million project awarded by the Foundation in May 2016 to a consortium of universities led by UC San Diego, UC Berkeley, Princeton University, and the University of Pennsylvania. In the Simons Observatory, new telescopes will join the existing POLARBEAR/Simons Array and Atacama Cosmology Telescopes to produce an order of magnitude more data than the current POLARBEAR experiment. An all-hands meeting for the new project will take place at SDSC this summer. A video describing the project can be viewed by clicking the image below.

Delivering the Data

The result of a five-year, $20 million NSF grant awarded in late 2009, Gordon entered production in early 2012 as one of the 50 fastest supercom­puters in the world, and the first one to use massive amounts of flash-based memory. That made it many times faster than conventional HPC systems, while having enough bandwidth to help researchers sift through tremendous amounts of data. Gordon also has been a key resource within NSF’s XSEDE (Extreme Science and Engineering Discovery Environment) project. The system will officially end its NSF duties on March 31 following two extensions from the agency.

By the end of February 2017, Gordon had supported research and education by more than 2,000 command-line users and over 7,000 gateway users, primarily through resource allocations from XSEDE.  One of Gordon’s most data-intensive tasks was to rapidly process raw data from almost one billion particle collisions as part of a project to help define the future research agenda for the Large Hadron Collider (LHC). Gordon provided auxiliary computing capacity by processing massive data sets generated by one of the LHC’s two large general-purpose particle detectors used to find the elusive Higgs particle. The around-the-clock data processing run on Gordon was completed in about four weeks’ time, making the data available for analysis several months ahead of schedule.

About the Simons Foundation

The Simons Foundation’s mission is to advance the frontiers of research in mathematics and the basic sciences, supporting discovery-driven scientific research. Co-founded in New York City by Jim and Marilyn Simons, the foundation celebrated its 20th anniversary in 2014. The Foundation makes grants in four program areas: mathematics and physical sciences, life sciences, autism research, and education and outreach. In 2016 the Foundation launched an internal research division called the Flatiron Institute, a multidisciplinary institute focused on computational science.

About SDSC

As an Organized Research Unit of UC San Diego, SDSC is considered a leader in data-intensive computing and cyberinfrastructure, providing resources, services, and expertise to the national research community, including industry and academia. Cyberinfrastructure refers to an accessible, integrated network of computer-based resources and expertise, focused on accelerating scientific inquiry and discovery. SDSC supports hundreds of multidisciplinary programs spanning a wide variety of domains, from earth sciences and biology to astrophysics, bioinformatics, and health IT. SDSC’s petascale Comet supercomputer continues to be a key resource within the National Science Foundation’s XSEDE (Extreme Science and Engineering Discovery Environment) program.


Source: SDSC

Subscribe to HPCwire's Weekly Update!

Be the most informed person in the room! Stay ahead of the tech trends with industy updates delivered to you every week!

Graphcore Readies Launch of 16nm Colossus-IPU Chip

July 20, 2017

A second $30 million funding round for U.K. AI chip developer Graphcore sets up the company to go to market with its “intelligent processing unit” (IPU) in 2017 with scale-up production for enterprise datacenters and Read more…

By Tiffany Trader

Fine-Tuning Severe Hail Forecasting with Machine Learning

July 20, 2017

Depending on whether you’ve been caught outside during a severe hail storm, the sight of greenish tinted clouds on the horizon may cause serious knots in the pit of your stomach, or at least give you pause. There’s g Read more…

By Sean Thielen

Trinity Supercomputer’s Haswell and KNL Partitions Are Merged

July 19, 2017

Trinity supercomputer’s two partitions – one based on Intel Xeon Haswell processors and the other on Xeon Phi Knights Landing – have been fully integrated are now available for use on classified work in the Nationa Read more…

By HPCwire Staff

Fujitsu Continues HPC, AI Push

July 19, 2017

Summer is well under way, but the so-called summertime slowdown, linked with hot temperatures and longer vacations, does not seem to have impacted Fujitsu's output. The Japanese multinational has made a raft of HPC and A Read more…

By Tiffany Trader

HPE Extreme Performance Solutions

HPE Servers Deliver High Performance Remote Visualization

Whether generating seismic simulations, locating new productive oil reservoirs, or constructing complex models of the earth’s subsurface, energy, oil, and gas (EO&G) is a highly data-driven industry. Read more…

Researchers Use DNA to Store and Retrieve Digital Movie

July 18, 2017

From abacus to pencil and paper to semiconductor chips, the technology of computing has always been an ever-changing target. The human brain is probably the computer we use most (hopefully) and understand least. This mon Read more…

By John Russell

The Exascale FY18 Budget – The Next Step

July 17, 2017

On July 12, 2017, the U.S. federal budget for its Exascale Computing Initiative (ECI) took its next step forward. On that day, the full Appropriations Committee of the House of Representatives voted to accept the recomme Read more…

By Alex R. Larzelere

Summer Reading: IEEE Spectrum’s Chip Hall of Fame

July 17, 2017

Take a trip down memory lane – the Mostek MK4096 4-kilobit DRAM, for instance. Perhaps processors are more to your liking. Remember the Sh-Boom processor (1988), created by Russell Fish and Chuck Moore, and named after Read more…

By John Russell

Women in HPC Luncheon Shines Light on Female-Friendly Hiring Practices

July 13, 2017

The second annual Women in HPC luncheon was held on June 20, 2017, during the International Supercomputing Conference in Frankfurt, Germany. The luncheon provides participants the opportunity to network with industry lea Read more…

By Tiffany Trader

Graphcore Readies Launch of 16nm Colossus-IPU Chip

July 20, 2017

A second $30 million funding round for U.K. AI chip developer Graphcore sets up the company to go to market with its “intelligent processing unit” (IPU) in Read more…

By Tiffany Trader

Fine-Tuning Severe Hail Forecasting with Machine Learning

July 20, 2017

Depending on whether you’ve been caught outside during a severe hail storm, the sight of greenish tinted clouds on the horizon may cause serious knots in the Read more…

By Sean Thielen

Fujitsu Continues HPC, AI Push

July 19, 2017

Summer is well under way, but the so-called summertime slowdown, linked with hot temperatures and longer vacations, does not seem to have impacted Fujitsu's out Read more…

By Tiffany Trader

Researchers Use DNA to Store and Retrieve Digital Movie

July 18, 2017

From abacus to pencil and paper to semiconductor chips, the technology of computing has always been an ever-changing target. The human brain is probably the com Read more…

By John Russell

The Exascale FY18 Budget – The Next Step

July 17, 2017

On July 12, 2017, the U.S. federal budget for its Exascale Computing Initiative (ECI) took its next step forward. On that day, the full Appropriations Committee Read more…

By Alex R. Larzelere

Women in HPC Luncheon Shines Light on Female-Friendly Hiring Practices

July 13, 2017

The second annual Women in HPC luncheon was held on June 20, 2017, during the International Supercomputing Conference in Frankfurt, Germany. The luncheon provid Read more…

By Tiffany Trader

Satellite Advances, NSF Computation Power Rapid Mapping of Earth’s Surface

July 13, 2017

New satellite technologies have completely changed the game in mapping and geographical data gathering, reducing costs and placing a new emphasis on time series Read more…

By Ken Chiacchia and Tiffany Jolley

Intel Skylake: Xeon Goes from Chip to Platform

July 13, 2017

With yesterday’s New York unveiling of the new “Skylake” Xeon Scalable processors, Intel made multiple runs at multiple competitive threats and strategic Read more…

By Doug Black

Google Pulls Back the Covers on Its First Machine Learning Chip

April 6, 2017

This week Google released a report detailing the design and performance characteristics of the Tensor Processing Unit (TPU), its custom ASIC for the inference Read more…

By Tiffany Trader

Nvidia Responds to Google TPU Benchmarking

April 10, 2017

Nvidia highlights strengths of its newest GPU silicon in response to Google's report on the performance and energy advantages of its custom tensor processor. Read more…

By Tiffany Trader

Quantum Bits: D-Wave and VW; Google Quantum Lab; IBM Expands Access

March 21, 2017

For a technology that’s usually characterized as far off and in a distant galaxy, quantum computing has been steadily picking up steam. Just how close real-wo Read more…

By John Russell

HPC Compiler Company PathScale Seeks Life Raft

March 23, 2017

HPCwire has learned that HPC compiler company PathScale has fallen on difficult times and is asking the community for help or actively seeking a buyer for its a Read more…

By Tiffany Trader

Trump Budget Targets NIH, DOE, and EPA; No Mention of NSF

March 16, 2017

President Trump’s proposed U.S. fiscal 2018 budget issued today sharply cuts science spending while bolstering military spending as he promised during the cam Read more…

By John Russell

CPU-based Visualization Positions for Exascale Supercomputing

March 16, 2017

In this contributed perspective piece, Intel’s Jim Jeffers makes the case that CPU-based visualization is now widely adopted and as such is no longer a contrarian view, but is rather an exascale requirement. Read more…

By Jim Jeffers, Principal Engineer and Engineering Leader, Intel

Nvidia’s Mammoth Volta GPU Aims High for AI, HPC

May 10, 2017

At Nvidia's GPU Technology Conference (GTC17) in San Jose, Calif., this morning, CEO Jensen Huang announced the company's much-anticipated Volta architecture a Read more…

By Tiffany Trader

Facebook Open Sources Caffe2; Nvidia, Intel Rush to Optimize

April 18, 2017

From its F8 developer conference in San Jose, Calif., today, Facebook announced Caffe2, a new open-source, cross-platform framework for deep learning. Caffe2 is the successor to Caffe, the deep learning framework developed by Berkeley AI Research and community contributors. Read more…

By Tiffany Trader

Leading Solution Providers

How ‘Knights Mill’ Gets Its Deep Learning Flops

June 22, 2017

Intel, the subject of much speculation regarding the delayed, rewritten or potentially canceled “Aurora” contract (the Argonne Lab part of the CORAL “ Read more…

By Tiffany Trader

Reinders: “AVX-512 May Be a Hidden Gem” in Intel Xeon Scalable Processors

June 29, 2017

Imagine if we could use vector processing on something other than just floating point problems.  Today, GPUs and CPUs work tirelessly to accelerate algorithms Read more…

By James Reinders

MIT Mathematician Spins Up 220,000-Core Google Compute Cluster

April 21, 2017

On Thursday, Google announced that MIT math professor and computational number theorist Andrew V. Sutherland had set a record for the largest Google Compute Engine (GCE) job. Sutherland ran the massive mathematics workload on 220,000 GCE cores using preemptible virtual machine instances. Read more…

By Tiffany Trader

Russian Researchers Claim First Quantum-Safe Blockchain

May 25, 2017

The Russian Quantum Center today announced it has overcome the threat of quantum cryptography by creating the first quantum-safe blockchain, securing cryptocurrencies like Bitcoin, along with classified government communications and other sensitive digital transfers. Read more…

By Doug Black

Google Debuts TPU v2 and will Add to Google Cloud

May 25, 2017

Not long after stirring attention in the deep learning/AI community by revealing the details of its Tensor Processing Unit (TPU), Google last week announced the Read more…

By John Russell

Groq This: New AI Chips to Give GPUs a Run for Deep Learning Money

April 24, 2017

CPUs and GPUs, move over. Thanks to recent revelations surrounding Google’s new Tensor Processing Unit (TPU), the computing world appears to be on the cusp of Read more…

By Alex Woodie

Six Exascale PathForward Vendors Selected; DoE Providing $258M

June 15, 2017

The much-anticipated PathForward awards for hardware R&D in support of the Exascale Computing Project were announced today with six vendors selected – AMD Read more…

By John Russell

Top500 Results: Latest List Trends and What’s in Store

June 19, 2017

Greetings from Frankfurt and the 2017 International Supercomputing Conference where the latest Top500 list has just been revealed. Although there were no major Read more…

By Tiffany Trader

  • arrow
  • Click Here for More Headlines
  • arrow
Share This