Keeping Big Data Cool at SDSC

June 29, 2016

June 29 — When most people think of a supercomputer center, they may think of one massive computer performing a single task. Inside the data center at the San Diego Supercomputer Center (SDSC) at the University of California San Diego, however, there are several large supercomputer systems, each performing multiple tasks simultaneously across a wide range of science domains that include genome sequencing to help pave the way to personalized medical treatment, coming up with new drug designs for conditions such as Parkinson’s and Alzheimer’s disease, or creating detailed fluid dynamics simulations for hypersonic aircraft.

Keeping SDSC’s main data center cool enough so that its Comet and Gordon supercomputers, among smaller clusters, don’t overheat is a complex yet mission-critical task, according to Todor Milkov, SDSC’s senior project engineer. A computing architecture such as the one found in Comet, SDSC’s newest supercomputer, requires one megawatt of power to operate the system. Using that much electricity generates a tremendous amount of heat, so SDSC, with the help of outside experts, developed three cooling system prototypes and conducted research to determine the most efficient system.

Each prototype system was designed using vendor-specific technology controlling five air handlers as a baseline to evaluate system performance. One of the prototypes used wireless temperature sensors that read the temperature of the hot and cold aisles every three minutes to increase battery life.

SDSC Datacenter AisleMany data centers use a standard hot aisle/cold aisle design. This design involves lining up server racks in alternating rows, with cold air intakes facing one way and hot air exhausts facing the other. The rows composed of rack fronts are called cold aisles. Typically, cold aisles face air conditioner output ducts. The rows that the heated exhausts pour into are called hot aisles. Typically, hot aisles face air conditioner return ducts.

Containment systems can help isolate hot aisles and cold aisles from each other and prevent hot and cold air from mixing. Such systems started out as using physical barriers that simply separated the hot and cold aisles with vinyl plastic sheeting or Plexiglas covers. Modern containment systems offer plenums and other commercial options that combine containment with variable fan drives (VFDs) to prevent cold air and hot air from mixing.

At SDSC, however, the entire area under the raised floor is used for the supply plenum, and the entire area above the ceiling is for the return plenum. Cold aisles use perforated floor tiles with specifically designed hole sizes to control the air flow volume from the space below the floor, while the hot aisles use ceiling grates that allow heated air to enter the space above the ceiling.

Controlling the air flow from all air handlers discharging into one common plenum presents a difficult problem, especially since these spaces also contain obstructions such as pipes and conduits. Moreover, not all of the compute clusters run at full capacity at any given time, and systems loads also change regularly as research projects start up or stop. These constantly changing factors cause the amount of heat dissipated from the supercomputer systems to fluctuate from minute to minute. The data center cooling system has to quickly adjust to accommodate these fluctuations in temperature.

“We learned a lot during the prototype and research phase of the cooling system design,” said Milkov. “We started by collecting a lot of data on how air flowed through the data center. We found that three minutes between temperature readings was too long an interval to keep the data center within the desired temperature ranges. Because of the longer interval, we used more electricity bringing the data center back to its temperature set points than we needed if we took temperature readings over shorter intervals and could make changes to the cooling system sooner.”

Realizing that a different approach was needed, Milkov put together a vendor evaluation process for an updated data center management system with the objective of reducing energy use while increasing the level of control capability available to the SDSC operations staff.

After extensive research, Milkov selected three companies for prototype installations. At the conclusion of a detailed evaluation, systems integration company Earth Base One (EBO) Corporation and a SNAP PAC-based control system were chosen for providing extensive control capabilities and energy savings.

Milkov and Michael Hyde, EBO’s president, approached the project with the same vision. “Rather than adapting an off-the-shelf data center management system to SDSC, we designed a tailor-built system for SDSC’s unique challenges,” said Hyde.

Opto 22, which develops and manufactures hardware and software products for applications in industrial automation, remote monitoring, and data acquisition, was chosen as the primary controls manufacturer. “The Opto 22 hardware and software not only won the competition for control and energy savings, but was also the least expensive vendor solution,” said Hyde. “The software’s excellent historical data collection and trending abilities allowed SDSC engineers to continue improving the system based on real data.”

“We appreciated the outstanding technical support SDSC received from Opto 22 during our design and prototype phase,” said Milkov. “When you’re trying to protect millions of dollars’ worth of research, you need a control system you can rely on.”

The full case study is available here.

About SDSC

As an Organized Research Unit of UC San Diego, SDSC is considered a leader in data-intensive computing and cyberinfrastructure, providing resources, services, and expertise to the national research community, including industry and academia. Cyberinfrastructure refers to an accessible, integrated network of computer-based resources and expertise, focused on accelerating scientific inquiry and discovery. SDSC supports hundreds of multidisciplinary programs spanning a wide variety of domains, from earth sciences and biology to astrophysics, bioinformatics, and health IT. SDSC’s Comet joins the Center’s data-intensive Gordon cluster, and are both part of the National Science Foundation’s XSEDE (eXtreme Science and Engineering Discovery Environment) program, the most advanced collection of integrated digital resources and services in the world.

About Opto 22

Opto 22 develops and manufactures hardware and software products for applications in industrial automation, remote monitoring, and data acquisition. Using standard, commercially available Internet, networking, and computer technologies, Opto 22’s input/output and control systems allow customers to monitor, control, and acquire data from all of the mechanical, electrical, and electronic assets that are key to their business operations. More information is at www.opto22.com.


Source: SDSC

Subscribe to HPCwire's Weekly Update!

Be the most informed person in the room! Stay ahead of the tech trends with industy updates delivered to you every week!

NSF Budget Approved for $8.3B in 2020, a 2.5% Increase

January 16, 2020

The National Science Foundation (NSF) has been spared a President Trump-proposed budget cut that would have rolled back its funding to 2012 levels. Congress passed legislation last month that sets the budget at $8.3 bill Read more…

By Staff report

NOAA Updates Its Massive, Supercomputer-Generated Climate Dataset

January 15, 2020

As Australia burns, understanding and mitigating the climate crisis is more urgent than ever. Now, by leveraging the computing resources at the National Energy Research Scientific Computing Center (NERSC), the U.S. National Oceanic and Atmospheric Administration (NOAA) has updated its 20th Century Reanalysis Project (20CR) dataset... Read more…

By Oliver Peckham

Atos-AMD System to Quintuple Supercomputing Power at European Centre for Medium-Range Weather Forecasts

January 15, 2020

The United Kingdom-based European Centre for Medium-Range Weather Forecasts (ECMWF), a supercomputer-powered weather forecasting organization backed by most of the countries in Europe, has signed a four-year, $89-million Read more…

By Oliver Peckham

Julia Programming’s Dramatic Rise in HPC and Elsewhere

January 14, 2020

Back in 2012 a paper by four computer scientists including Alan Edelman of MIT introduced Julia, A Fast Dynamic Language for Technical Computing. At the time, the gold standard programming languages for fast performance Read more…

By John Russell

Quantum Computing, ML Drive 2019 Patent Awards

January 14, 2020

The dizzying pace of technology innovation often fueled by the growing availability of computing horsepower is underscored by the race to develop unique designs and application that can be patented. Among the goals of ma Read more…

By George Leopold

AWS Solution Channel

Challenging the barriers to High Performance Computing in the Cloud

Cloud computing helps democratize High Performance Computing by placing powerful computational capabilities in the hands of more researchers, engineers, and organizations who may lack access to sufficient on-premises infrastructure. Read more…

IBM Accelerated Insights

Intelligent HPC – Keeping Hard Work at Bay(es)

Since the dawn of time, humans have looked for ways to make their lives easier. Over the centuries human ingenuity has given us inventions such as the wheel and simple machines – which help greatly with tasks that would otherwise be extremely laborious. Read more…

Andrew Jones Joins Microsoft Azure HPC Team

January 13, 2020

Andrew Jones announced today he is joining Microsoft as part of the Azure HPC engineering & product team in early February. Jones makes the move after nearly 12 years at the UK HPC consultancy Numerical Algorithms Gr Read more…

By Staff report

Atos-AMD System to Quintuple Supercomputing Power at European Centre for Medium-Range Weather Forecasts

January 15, 2020

The United Kingdom-based European Centre for Medium-Range Weather Forecasts (ECMWF), a supercomputer-powered weather forecasting organization backed by most of Read more…

By Oliver Peckham

Julia Programming’s Dramatic Rise in HPC and Elsewhere

January 14, 2020

Back in 2012 a paper by four computer scientists including Alan Edelman of MIT introduced Julia, A Fast Dynamic Language for Technical Computing. At the time, t Read more…

By John Russell

White House AI Regulatory Guidelines: ‘Remove Impediments to Private-sector AI Innovation’

January 9, 2020

When it comes to new technology, it’s been said government initially stays uninvolved – then gets too involved. The White House’s guidelines for federal a Read more…

By Doug Black

IBM Touts Quantum Network Growth, Improving QC Quality, and Battery Research

January 8, 2020

IBM today announced its Q (quantum) Network community had grown to 100-plus – Delta Airlines and Los Alamos National Laboratory are among most recent addition Read more…

By John Russell

HPCwire Awards Highlight Supercomputing Achievements in the Sciences

January 7, 2020

In November at SC19 in Denver, the HPCwire Readers’ and Editors’ Choice awards program celebrated its 16th year of honoring remarkable achievements in high-performance computing. With categories ranging from Best Use of HPC in Energy to Top HPC-Enabled Scientific Achievement, many of the winners contributed to groundbreaking developments in the sciences. This editorial highlights those awards. Read more…

By Oliver Peckham

Blasts from the (Recent) Past and Hopes for the Future

December 23, 2019

What does 2020 look like to you? What did 2019 look like? Lots happened but the main trends were carryovers from 2018 – AI messaging again blanketed everything; the roll-out of new big machines and exascale announcements continued; processor diversity and system disaggregation kicked up a notch; hyperscalers continued flexing their muscles (think AWS and its Graviton2 processor); and the U.S. and China continued their awkward trade war. Read more…

By John Russell

ARPA-E Applies ML to Power Generation Designs

December 19, 2019

The U.S. Energy Department’s research arm is leveraging machine learning technologies to simplify the design process for energy systems ranging from photovolt Read more…

By George Leopold

Focused on ‘Silicon TAM,’ Intel Puts Gary Patton, Former GlobalFoundries CTO, in Charge of Design Enablement

December 12, 2019

Change within Intel’s upper management – and to its company mission – has continued as a published report has disclosed that chip technology heavyweight G Read more…

By Doug Black

Using AI to Solve One of the Most Prevailing Problems in CFD

October 17, 2019

How can artificial intelligence (AI) and high-performance computing (HPC) solve mesh generation, one of the most commonly referenced problems in computational engineering? A new study has set out to answer this question and create an industry-first AI-mesh application... Read more…

By James Sharpe

D-Wave’s Path to 5000 Qubits; Google’s Quantum Supremacy Claim

September 24, 2019

On the heels of IBM’s quantum news last week come two more quantum items. D-Wave Systems today announced the name of its forthcoming 5000-qubit system, Advantage (yes the name choice isn’t serendipity), at its user conference being held this week in Newport, RI. Read more…

By John Russell

SC19: IBM Changes Its HPC-AI Game Plan

November 25, 2019

It’s probably fair to say IBM is known for big bets. Summit supercomputer – a big win. Red Hat acquisition – looking like a big win. OpenPOWER and Power processors – jury’s out? At SC19, long-time IBMer Dave Turek sketched out a different kind of bet for Big Blue – a small ball strategy, if you’ll forgive the baseball analogy... Read more…

By John Russell

Cray, Fujitsu Both Bringing Fujitsu A64FX-based Supercomputers to Market in 2020

November 12, 2019

The number of top-tier HPC systems makers has shrunk due to a steady march of M&A activity, but there is increased diversity and choice of processing compon Read more…

By Tiffany Trader

Crystal Ball Gazing: IBM’s Vision for the Future of Computing

October 14, 2019

Dario Gil, IBM’s relatively new director of research, painted a intriguing portrait of the future of computing along with a rough idea of how IBM thinks we’ Read more…

By John Russell

Julia Programming’s Dramatic Rise in HPC and Elsewhere

January 14, 2020

Back in 2012 a paper by four computer scientists including Alan Edelman of MIT introduced Julia, A Fast Dynamic Language for Technical Computing. At the time, t Read more…

By John Russell

Intel Debuts New GPU – Ponte Vecchio – and Outlines Aspirations for oneAPI

November 17, 2019

Intel today revealed a few more details about its forthcoming Xe line of GPUs – the top SKU is named Ponte Vecchio and will be used in Aurora, the first plann Read more…

By John Russell

Dell Ramps Up HPC Testing of AMD Rome Processors

October 21, 2019

Dell Technologies is wading deeper into the AMD-based systems market with a growing evaluation program for the latest Epyc (Rome) microprocessors from AMD. In a Read more…

By John Russell

Leading Solution Providers

SC 2019 Virtual Booth Video Tour

AMD
AMD
ASROCK RACK
ASROCK RACK
AWS
AWS
CEJN
CJEN
CRAY
CRAY
DDN
DDN
DELL EMC
DELL EMC
IBM
IBM
MELLANOX
MELLANOX
ONE STOP SYSTEMS
ONE STOP SYSTEMS
PANASAS
PANASAS
SIX NINES IT
SIX NINES IT
VERNE GLOBAL
VERNE GLOBAL
WEKAIO
WEKAIO

IBM Unveils Latest Achievements in AI Hardware

December 13, 2019

“The increased capabilities of contemporary AI models provide unprecedented recognition accuracy, but often at the expense of larger computational and energet Read more…

By Oliver Peckham

SC19: Welcome to Denver

November 17, 2019

A significant swath of the HPC community has come to Denver for SC19, which began today (Sunday) with a rich technical program. As is customary, the ribbon cutt Read more…

By Tiffany Trader

With the Help of HPC, Astronomers Prepare to Deflect a Real Asteroid

September 26, 2019

For years, NASA has been running simulations of asteroid impacts to understand the risks (and likelihoods) of asteroids colliding with Earth. Now, NASA and the European Space Agency (ESA) are preparing for the next, crucial step in planetary defense against asteroid impacts: physically deflecting a real asteroid. Read more…

By Oliver Peckham

Jensen Huang’s SC19 – Fast Cars, a Strong Arm, and Aiming for the Cloud(s)

November 20, 2019

We’ve come to expect Nvidia CEO Jensen Huang’s annual SC keynote to contain stunning graphics and lively bravado (with plenty of examples) in support of GPU Read more…

By John Russell

Top500: US Maintains Performance Lead; Arm Tops Green500

November 18, 2019

The 54th Top500, revealed today at SC19, is a familiar list: the U.S. Summit (ORNL) and Sierra (LLNL) machines, offering 148.6 and 94.6 petaflops respectively, Read more…

By Tiffany Trader

51,000 Cloud GPUs Converge to Power Neutrino Discovery at the South Pole

November 22, 2019

At the dead center of the South Pole, thousands of sensors spanning a cubic kilometer are buried thousands of meters beneath the ice. The sensors are part of Ic Read more…

By Oliver Peckham

Azure Cloud First with AMD Epyc Rome Processors

November 6, 2019

At Ignite 2019 this week, Microsoft's Azure cloud team and AMD announced an expansion of their partnership that began in 2017 when Azure debuted Epyc-backed instances for storage workloads. The fourth-generation Azure D-series and E-series virtual machines previewed at the Rome launch in August are now generally available. Read more…

By Tiffany Trader

Summit Has Real-Time Analytics: Here’s How It Happened and What’s Next

October 3, 2019

Summit – the world’s fastest publicly-ranked supercomputer – now has real-time streaming analytics. At the 2019 HPC User Forum at Argonne National Laborat Read more…

By Oliver Peckham

  • arrow
  • Click Here for More Headlines
  • arrow
Do NOT follow this link or you will be banned from the site!
Share This