N8 Supercomputer Tracks First Dinosaur Steps in Over 90 Million Years

October 31, 2013

Oct. 31 — Scientists at The University of Manchester have used Polaris, the N8 Research Partnership High Performance Computing (N8 HPC) facility, to simulate for the first time ever how one of the world’s largest dinosaurs would have walked.

The analysis has revealed that Argentinosaurus, which weighed more than 80 tonnes, would have walked with a slow steady gait. The research, published in PLOS ONE, is important for understanding more about musculoskeletal systems since all vertebrates, from dinosaurs to humans to fish, all share the same basic muscles, bones and joints.

N8 HPC, which is funded by the Engineering and Physical Science Research Council (EPSRC), provides a high performance computing facility service for the Universities of Durham, Lancaster, Leeds, Liverpool, Manchester, Newcastle, Sheffield and York – an established collaboration known as the N8 Research Partnership – and industry partners. Capable of a peak performance of 110 trillion operations per second – the approximate equivalent to half a million iPads – it enables academic and private sector researchers to build more realistic models involving large amounts of data and to undertake more complex analyses in many research fields, including life sciences, energy, digital media and aerospace.

Dr. Bill Sellers, lead researcher on the project from the University of Manchester, Faculty of Life Sciences said, “If you want to work out how dinosaurs walked, the best approach is computer simulation. This is the only way of bringing together all the different strands of information we have on this dinosaur so that we can reconstruct how it once moved.

“To understand how muscles, bones and joints function, we can compare how they are used in different animals. Argentinosaurus is the biggest animal that ever walked on the surface of the earth and understanding how it did this will tell us a lot about the maximum performance of the vertebrate musculoskeletal system.  We need to know more about this to understand how it functions in ourselves.

“Similarly, if we want to build better legged robots then we need to know more about the mechanics of legs in a whole range of animals, and nothing has bigger, more powerful legs than Argentinosaurus.”

The £3.25m N8 HPC facility is a Tier 2 SGI 5,000+ core high performance computing cluster, with 332 compute nodes. Each node has two of the latest generation Intel E5-2670 ‘Sandy Bridge’ processors and these nodes have a capacity of 320 GigaFLOPS. By using a Mellanox QDR InfiniBand interconnect to join all of Polaris’ nodes together, a peak performance of 110 TeraFLOPS is possible, making it one of the 250 most powerful computers in the world.

Dr. Lee Margetts, of The University of Manchester Research Computing Services, said, “Access to the N8 HPC system was a critical factor that enabled the team to finish the research in time for the PLOS ONE Special Collection on Sauropods. Timing is important as this collection is likely to be the “de facto” international reference for Sauropods for decades to come. The researchers report that they were very impressed by the system as their software ran twice as fast on N8HPC than HECToR, when using the same number of cores.”

The team of scientists also included Dr Rodolfo Coria from Carmen Funes Museum, Plaza Huincal, Argentina, who was behind the first physical reconstruction of this dinosaur that takes its name from the country where it was found. Dr Phil Manning, from Manchester who also contributed to the paper, said: “It is frustrating there was so little of the original dinosaur fossilized, making any reconstruction difficult. The digitization of such vast dinosaur skeletons using laser scanners brings Walking with Dinosaurs to life…this is science not just animation.”

The University Manchester team now plans to use the same method to recreate the steps of other dinosaurs including Triceratops, Brachiosaurus and T.Rex.

To find out more about the N8 HPC, visit www.n8hpc.org.uk. For information about the N8 research Partnership, visit www.n8research.org

—–

Source: University of Manchester

Subscribe to HPCwire's Weekly Update!

Be the most informed person in the room! Stay ahead of the tech trends with industy updates delivered to you every week!

TACC Helps ROSIE Bioscience Gateway Expand its Impact

April 26, 2017

Biomolecule structure prediction has long been challenging not least because the relevant software and workflows often require high-end HPC systems that many bioscience researchers lack easy access to. Read more…

By John Russell

Messina Update: The US Path to Exascale in 16 Slides

April 26, 2017

Paul Messina, director of the U.S. Exascale Computing Project, provided a wide-ranging review of ECP’s evolving plans last week at the HPC User Forum. Read more…

By John Russell

IBM, Nvidia, Stone Ridge Claim Gas & Oil Simulation Record

April 25, 2017

IBM, Nvidia, and Stone Ridge Technology today reported setting the performance record for a “billion cell” oil and gas reservoir simulation. Read more…

By John Russell

ASC17 Makes Splash at Wuxi Supercomputing Center

April 24, 2017

A record-breaking twenty student teams plus scores of company representatives, media professionals, staff and student volunteers transformed a formerly empty hall inside the Wuxi Supercomputing Center into a bustling hub of HPC activity, kicking off day one of 2017 Asia Student Supercomputer Challenge (ASC17). Read more…

By Tiffany Trader

HPE Extreme Performance Solutions

Remote Visualization Optimizing Life Sciences Operations and Care Delivery

As patients continually demand a better quality of care and increasingly complex workloads challenge healthcare organizations to innovate, investing in the right technologies is key to ensuring growth and success. Read more…

Groq This: New AI Chips to Give GPUs a Run for Deep Learning Money

April 24, 2017

CPUs and GPUs, move over. Thanks to recent revelations surrounding Google’s new Tensor Processing Unit (TPU), the computing world appears to be on the cusp of a new generation of chips designed specifically for deep learning workloads. Read more…

By Alex Woodie

Musk’s Latest Startup Eyes Brain-Computer Links

April 21, 2017

Elon Musk, the auto and space entrepreneur and severe critic of artificial intelligence, is forming a new venture that reportedly will seek to develop an interface between the human brain and computers. Read more…

By George Leopold

MIT Mathematician Spins Up 220,000-Core Google Compute Cluster

April 21, 2017

On Thursday, Google announced that MIT math professor and computational number theorist Andrew V. Sutherland had set a record for the largest Google Compute Engine (GCE) job. Sutherland ran the massive mathematics workload on 220,000 GCE cores using preemptible virtual machine instances. Read more…

By Tiffany Trader

NERSC Cori Shows the World How Many-Cores for the Masses Works

April 21, 2017

As its mission, the high performance computing center for the U.S. Department of Energy Office of Science, NERSC (the National Energy Research Supercomputer Center), supports a broad spectrum of forefront scientific research across diverse areas that includes climate, material science, chemistry, fusion energy, high-energy physics and many others. Read more…

By Rob Farber

Messina Update: The US Path to Exascale in 16 Slides

April 26, 2017

Paul Messina, director of the U.S. Exascale Computing Project, provided a wide-ranging review of ECP’s evolving plans last week at the HPC User Forum. Read more…

By John Russell

ASC17 Makes Splash at Wuxi Supercomputing Center

April 24, 2017

A record-breaking twenty student teams plus scores of company representatives, media professionals, staff and student volunteers transformed a formerly empty hall inside the Wuxi Supercomputing Center into a bustling hub of HPC activity, kicking off day one of 2017 Asia Student Supercomputer Challenge (ASC17). Read more…

By Tiffany Trader

Groq This: New AI Chips to Give GPUs a Run for Deep Learning Money

April 24, 2017

CPUs and GPUs, move over. Thanks to recent revelations surrounding Google’s new Tensor Processing Unit (TPU), the computing world appears to be on the cusp of a new generation of chips designed specifically for deep learning workloads. Read more…

By Alex Woodie

NERSC Cori Shows the World How Many-Cores for the Masses Works

April 21, 2017

As its mission, the high performance computing center for the U.S. Department of Energy Office of Science, NERSC (the National Energy Research Supercomputer Center), supports a broad spectrum of forefront scientific research across diverse areas that includes climate, material science, chemistry, fusion energy, high-energy physics and many others. Read more…

By Rob Farber

Hyperion (IDC) Paints a Bullish Picture of HPC Future

April 20, 2017

Hyperion Research – formerly IDC’s HPC group – yesterday painted a fascinating and complicated portrait of the HPC community’s health and prospects at the HPC User Forum held in Albuquerque, NM. HPC sales are up and growing ($22 billion, all HPC segments, 2016). Read more…

By John Russell

Knights Landing Processor with Omni-Path Makes Cloud Debut

April 18, 2017

HPC cloud specialist Rescale is partnering with Intel and HPC resource provider R Systems to offer first-ever cloud access to Xeon Phi "Knights Landing" processors. The infrastructure is based on the 68-core Intel Knights Landing processor with integrated Omni-Path fabric (the 7250F Xeon Phi). Read more…

By Tiffany Trader

CERN openlab Explores New CPU/FPGA Processing Solutions

April 14, 2017

Through a CERN openlab project known as the ‘High-Throughput Computing Collaboration,’ researchers are investigating the use of various Intel technologies in data filtering and data acquisition systems. Read more…

By Linda Barney

DOE Supercomputer Achieves Record 45-Qubit Quantum Simulation

April 13, 2017

In order to simulate larger and larger quantum systems and usher in an age of “quantum supremacy,” researchers are stretching the limits of today’s most advanced supercomputers. Read more…

By Tiffany Trader

Google Pulls Back the Covers on Its First Machine Learning Chip

April 6, 2017

This week Google released a report detailing the design and performance characteristics of the Tensor Processing Unit (TPU), its custom ASIC for the inference phase of neural networks (NN). Read more…

By Tiffany Trader

Quantum Bits: D-Wave and VW; Google Quantum Lab; IBM Expands Access

March 21, 2017

For a technology that’s usually characterized as far off and in a distant galaxy, quantum computing has been steadily picking up steam. Read more…

By John Russell

Trump Budget Targets NIH, DOE, and EPA; No Mention of NSF

March 16, 2017

President Trump’s proposed U.S. fiscal 2018 budget issued today sharply cuts science spending while bolstering military spending as he promised during the campaign. Read more…

By John Russell

HPC Compiler Company PathScale Seeks Life Raft

March 23, 2017

HPCwire has learned that HPC compiler company PathScale has fallen on difficult times and is asking the community for help or actively seeking a buyer for its assets. Read more…

By Tiffany Trader

Nvidia Responds to Google TPU Benchmarking

April 10, 2017

Nvidia highlights strengths of its newest GPU silicon in response to Google's report on the performance and energy advantages of its custom tensor processor. Read more…

By Tiffany Trader

CPU-based Visualization Positions for Exascale Supercomputing

March 16, 2017

In this contributed perspective piece, Intel’s Jim Jeffers makes the case that CPU-based visualization is now widely adopted and as such is no longer a contrarian view, but is rather an exascale requirement. Read more…

By Jim Jeffers, Principal Engineer and Engineering Leader, Intel

For IBM/OpenPOWER: Success in 2017 = (Volume) Sales

January 11, 2017

To a large degree IBM and the OpenPOWER Foundation have done what they said they would – assembling a substantial and growing ecosystem and bringing Power-based products to market, all in about three years. Read more…

By John Russell

TSUBAME3.0 Points to Future HPE Pascal-NVLink-OPA Server

February 17, 2017

Since our initial coverage of the TSUBAME3.0 supercomputer yesterday, more details have come to light on this innovative project. Of particular interest is a new board design for NVLink-equipped Pascal P100 GPUs that will create another entrant to the space currently occupied by Nvidia's DGX-1 system, IBM's "Minsky" platform and the Supermicro SuperServer (1028GQ-TXR). Read more…

By Tiffany Trader

Leading Solution Providers

Tokyo Tech’s TSUBAME3.0 Will Be First HPE-SGI Super

February 16, 2017

In a press event Friday afternoon local time in Japan, Tokyo Institute of Technology (Tokyo Tech) announced its plans for the TSUBAME3.0 supercomputer, which will be Japan’s “fastest AI supercomputer,” Read more…

By Tiffany Trader

Is Liquid Cooling Ready to Go Mainstream?

February 13, 2017

Lost in the frenzy of SC16 was a substantial rise in the number of vendors showing server oriented liquid cooling technologies. Three decades ago liquid cooling was pretty much the exclusive realm of the Cray-2 and IBM mainframe class products. That’s changing. We are now seeing an emergence of x86 class server products with exotic plumbing technology ranging from Direct-to-Chip to servers and storage completely immersed in a dielectric fluid. Read more…

By Steve Campbell

IBM Wants to be “Red Hat” of Deep Learning

January 26, 2017

IBM today announced the addition of TensorFlow and Chainer deep learning frameworks to its PowerAI suite of deep learning tools, which already includes popular offerings such as Caffe, Theano, and Torch. Read more…

By John Russell

Facebook Open Sources Caffe2; Nvidia, Intel Rush to Optimize

April 18, 2017

From its F8 developer conference in San Jose, Calif., today, Facebook announced Caffe2, a new open-source, cross-platform framework for deep learning. Caffe2 is the successor to Caffe, the deep learning framework developed by Berkeley AI Research and community contributors. Read more…

By Tiffany Trader

BioTeam’s Berman Charts 2017 HPC Trends in Life Sciences

January 4, 2017

Twenty years ago high performance computing was nearly absent from life sciences. Today it’s used throughout life sciences and biomedical research. Genomics and the data deluge from modern lab instruments are the main drivers, but so is the longer-term desire to perform predictive simulation in support of Precision Medicine (PM). There’s even a specialized life sciences supercomputer, ‘Anton’ from D.E. Shaw Research, and the Pittsburgh Supercomputing Center is standing up its second Anton 2 and actively soliciting project proposals. There’s a lot going on. Read more…

By John Russell

HPC Startup Advances Auto-Parallelization’s Promise

January 23, 2017

The shift from single core to multicore hardware has made finding parallelism in codes more important than ever, but that hasn’t made the task of parallel programming any easier. Read more…

By Tiffany Trader

HPC Technique Propels Deep Learning at Scale

February 21, 2017

Researchers from Baidu’s Silicon Valley AI Lab (SVAIL) have adapted a well-known HPC communication technique to boost the speed and scale of their neural network training and now they are sharing their implementation with the larger deep learning community. Read more…

By Tiffany Trader

IDG to Be Bought by Chinese Investors; IDC to Spin Out HPC Group

January 19, 2017

US-based publishing and investment firm International Data Group, Inc. (IDG) will be acquired by a pair of Chinese investors, China Oceanwide Holdings Group Co., Ltd. Read more…

By Tiffany Trader

  • arrow
  • Click Here for More Headlines
  • arrow
Share This