PNNL, OHSU Create Joint Research Co-Laboratory to Advance Precision Medicine

February 14, 2018

PORTLAND, Ore., Feb. 14, 2018 — Pacific Northwest National Laboratory and OHSU today announced a joint collaboration to improve patient care by focusing research on highly complex sets of biomedical data, and the tools to interpret them.

The OHSU-PNNL Precision Medicine Innovation Co-Laboratory, called PMedIC, will provide a comprehensive ecosystem for scientists to utilize integrated ‘omics, data science and imaging technologies in their research in order to advance precision medicine — an approach to disease treatment that takes into account individual variability in genes, environment and lifestyle for each person.

“This effort brings together the unique and complementary strengths of Oregon’s only academic medical center, which has a reputation for innovative clinical trial designs, and a national laboratory with an international reputation for basic science and technology development in support of biological applications,” said OHSU President Joe Robertson. “Together, OHSU and PNNL will be able to solve complex problems in biomedical research that neither institution could solve alone.”

“The leading biomedical research and clinical work performed at OHSU pairs well with PNNL’s world-class expertise in data science and mass spectrometry analyses of proteins and genes,” said PNNL Director Steven Ashby. “By combining our complementary capabilities, we will make fundamental discoveries and accelerate our ability to tailor healthcare to individual patients.”

The co-laboratory will strengthen and expand the scope of existing interactions between OHSU and PNNL that already include cancer, regulation of the cardiovascular function, immunology and infection, and brain function, and add new collaborations in areas from metabolism to exposure science. The collaboration brings together the two institution’s strengths in data science, imaging and integrated ‘omics, which explores how genes, proteins and various metabolic products interact. The term arises from research that explores the function of key biological components within the context of the entire cell — genomics for genes, proteomics for proteins, and so on.

“PNNL has a reputation for excellence in the technical skill sets required for precision medicine, specifically advanced ‘omic’ platforms that measure the body’s key molecules — genes, proteins and metabolites — and the advanced data analysis methods to interpret these measurements,” said Karin Rodland, director of biomedical partnerships at PNNL. “Pairing these capabilities with the outstanding biomedical research environment and innovative clinical trials at OHSU will advance the field of precision medicine and lead to improved patient outcomes.”

In the long term, OHSU and PNNL aim to foster a generation of biomedical researchers fluent in all the aspects of the science underlying precision medicine, from clinical trials to molecular and computational biology to bioengineering and technology development — a new generation of scientists skilled in translating basic science discoveries to clinical care.

“Just as we have many neuroscientists focused on brain science at OHSU, we have many researchers taking different approaches on the path toward the goal of precision medicine,” said Mary Heinricher, associate dean of basic research, OHSU School of Medicine. “I believe one of the greatest opportunities of this collaboration is for OHSU graduate students and post-docs to have exposure to new technologies and collaborations with PNNL. This will help train the next generation of scientists.”

OHSU and PNNL first collaborated in 2015, when they formed the OHSU-PNNL Northwest Co-Laboratory for Integrated ‘Omicsand were designated a national Metabolomics Center for the Undiagnosed Disease Network, an NIH-funded national network designed to identify underlying mechanisms of very rare diseases. In 2017, the two organizations partnered on a National Cancer Institute-sponsored effort to become a Proteogenomic Translational Research Center focused on a complex form of leukemia.


Source: PNNL

Subscribe to HPCwire's Weekly Update!

Be the most informed person in the room! Stay ahead of the tech trends with industy updates delivered to you every week!

What’s New in HPC Research: Quantum Clouds, Interatomic Models, Genetic Algorithms & More

February 14, 2020

In this bimonthly feature, HPCwire highlights newly published research in the high-performance computing community and related domains. From parallel programming to exascale to quantum computing, the details are here. Read more…

By Oliver Peckham

The Massive GPU Cloudburst Experiment Plays a Smaller, More Productive Encore

February 13, 2020

In November, researchers at the San Diego Supercomputer Center (SDSC) and the IceCube Particle Astrophysics Center (WIPAC) set out to break the internet – or at least, pull off the cloud HPC equivalent. As part of thei Read more…

By Oliver Peckham

ORNL Team Develops AI-based Cancer Text Mining Tool on Summit

February 13, 2020

A group of Oak Ridge National Laboratory researchers working on the Summit supercomputer has developed a new neural network tool for fast extraction of information from cancer pathology reports to speed research and clin Read more…

By John Russell

Nature Serves up Another Challenge to Quantum Computing?

February 13, 2020

Just when you thought it was safe to assume quantum computing – though distant – would eventually succumb to clever technology, another potentially confounding factor pops up. It’s the Heisenberg Limit (HL), close Read more…

By John Russell

Researchers Enlist Three Supercomputers to Apply Deep Learning to Extreme Weather

February 12, 2020

When it comes to extreme weather, an errant forecast can have serious effects. While advance warning can give people time to prepare for the weather as it did with the polar vortex last year, the absence of accurate adva Read more…

By Oliver Peckham

AWS Solution Channel

Challenging the barriers to High Performance Computing in the Cloud

Cloud computing helps democratize High Performance Computing by placing powerful computational capabilities in the hands of more researchers, engineers, and organizations who may lack access to sufficient on-premises infrastructure. Read more…

IBM Accelerated Insights

Intelligent HPC – Keeping Hard Work at Bay(es)

Since the dawn of time, humans have looked for ways to make their lives easier. Over the centuries human ingenuity has given us inventions such as the wheel and simple machines – which help greatly with tasks that would otherwise be extremely laborious. Read more…

Eni to Retake Industry HPC Crown with Launch of HPC5

February 12, 2020

With the launch of its Dell-built HPC5 system, Italian energy company Eni regains its position atop the industrial supercomputing leaderboard. At 52-petaflops peak, HPC5 should easily crack the top ten fold of the next T Read more…

By Tiffany Trader

The Massive GPU Cloudburst Experiment Plays a Smaller, More Productive Encore

February 13, 2020

In November, researchers at the San Diego Supercomputer Center (SDSC) and the IceCube Particle Astrophysics Center (WIPAC) set out to break the internet – or Read more…

By Oliver Peckham

Eni to Retake Industry HPC Crown with Launch of HPC5

February 12, 2020

With the launch of its Dell-built HPC5 system, Italian energy company Eni regains its position atop the industrial supercomputing leaderboard. At 52-petaflops p Read more…

By Tiffany Trader

Trump Budget Proposal Again Slashes Science Spending

February 11, 2020

President Donald Trump’s FY2021 U.S. Budget, submitted to Congress this week, again slashes science spending. It’s a $4.8 trillion statement of priorities, Read more…

By John Russell

Policy: Republicans Eye Bigger Science Budgets; NSF Celebrates 70th, Names Idea Machine Winners

February 5, 2020

It’s a busy week for science policy. Yesterday, the National Science Foundation announced winners of its 2026 Idea Machine contest seeking directions for futu Read more…

By John Russell

Fujitsu A64FX Supercomputer to Be Deployed at Nagoya University This Summer

February 3, 2020

Japanese tech giant Fujitsu announced today that it will supply Nagoya University Information Technology Center with the first commercial supercomputer powered Read more…

By Tiffany Trader

Intel Stopping Nervana Development to Focus on Habana AI Chips

February 3, 2020

Just two months after acquiring Israeli AI chip start-up Habana Labs for $2 billion, Intel is stopping development of its existing Nervana neural network proces Read more…

By John Russell

Lise Supercomputer, Part of HLRN-IV, Begins Operations

January 29, 2020

The second phase of the build-out of HLRN-IV – the planned 16 peak-petaflops supercomputer serving the North-German Supercomputing Alliance (HLRN) – is unde Read more…

By Staff report

IBM Debuts IC922 Power Server for AI Inferencing and Data Management

January 28, 2020

IBM today launched a Power9-based inference server – the IC922 – that features up to six Nvidia T4 GPUs, PCIe Gen 4 and OpenCAPI connectivity, and can accom Read more…

By John Russell

Julia Programming’s Dramatic Rise in HPC and Elsewhere

January 14, 2020

Back in 2012 a paper by four computer scientists including Alan Edelman of MIT introduced Julia, A Fast Dynamic Language for Technical Computing. At the time, t Read more…

By John Russell

Cray, Fujitsu Both Bringing Fujitsu A64FX-based Supercomputers to Market in 2020

November 12, 2019

The number of top-tier HPC systems makers has shrunk due to a steady march of M&A activity, but there is increased diversity and choice of processing compon Read more…

By Tiffany Trader

SC19: IBM Changes Its HPC-AI Game Plan

November 25, 2019

It’s probably fair to say IBM is known for big bets. Summit supercomputer – a big win. Red Hat acquisition – looking like a big win. OpenPOWER and Power processors – jury’s out? At SC19, long-time IBMer Dave Turek sketched out a different kind of bet for Big Blue – a small ball strategy, if you’ll forgive the baseball analogy... Read more…

By John Russell

Intel Debuts New GPU – Ponte Vecchio – and Outlines Aspirations for oneAPI

November 17, 2019

Intel today revealed a few more details about its forthcoming Xe line of GPUs – the top SKU is named Ponte Vecchio and will be used in Aurora, the first plann Read more…

By John Russell

Dell Ramps Up HPC Testing of AMD Rome Processors

October 21, 2019

Dell Technologies is wading deeper into the AMD-based systems market with a growing evaluation program for the latest Epyc (Rome) microprocessors from AMD. In a Read more…

By John Russell

IBM Unveils Latest Achievements in AI Hardware

December 13, 2019

“The increased capabilities of contemporary AI models provide unprecedented recognition accuracy, but often at the expense of larger computational and energet Read more…

By Oliver Peckham

SC19: Welcome to Denver

November 17, 2019

A significant swath of the HPC community has come to Denver for SC19, which began today (Sunday) with a rich technical program. As is customary, the ribbon cutt Read more…

By Tiffany Trader

D-Wave’s Path to 5000 Qubits; Google’s Quantum Supremacy Claim

September 24, 2019

On the heels of IBM’s quantum news last week come two more quantum items. D-Wave Systems today announced the name of its forthcoming 5000-qubit system, Advantage (yes the name choice isn’t serendipity), at its user conference being held this week in Newport, RI. Read more…

By John Russell

Leading Solution Providers

SC 2019 Virtual Booth Video Tour

AMD
AMD
ASROCK RACK
ASROCK RACK
AWS
AWS
CEJN
CJEN
CRAY
CRAY
DDN
DDN
DELL EMC
DELL EMC
IBM
IBM
MELLANOX
MELLANOX
ONE STOP SYSTEMS
ONE STOP SYSTEMS
PANASAS
PANASAS
SIX NINES IT
SIX NINES IT
VERNE GLOBAL
VERNE GLOBAL
WEKAIO
WEKAIO

Jensen Huang’s SC19 – Fast Cars, a Strong Arm, and Aiming for the Cloud(s)

November 20, 2019

We’ve come to expect Nvidia CEO Jensen Huang’s annual SC keynote to contain stunning graphics and lively bravado (with plenty of examples) in support of GPU Read more…

By John Russell

51,000 Cloud GPUs Converge to Power Neutrino Discovery at the South Pole

November 22, 2019

At the dead center of the South Pole, thousands of sensors spanning a cubic kilometer are buried thousands of meters beneath the ice. The sensors are part of Ic Read more…

By Oliver Peckham

Fujitsu A64FX Supercomputer to Be Deployed at Nagoya University This Summer

February 3, 2020

Japanese tech giant Fujitsu announced today that it will supply Nagoya University Information Technology Center with the first commercial supercomputer powered Read more…

By Tiffany Trader

Top500: US Maintains Performance Lead; Arm Tops Green500

November 18, 2019

The 54th Top500, revealed today at SC19, is a familiar list: the U.S. Summit (ORNL) and Sierra (LLNL) machines, offering 148.6 and 94.6 petaflops respectively, Read more…

By Tiffany Trader

Azure Cloud First with AMD Epyc Rome Processors

November 6, 2019

At Ignite 2019 this week, Microsoft's Azure cloud team and AMD announced an expansion of their partnership that began in 2017 when Azure debuted Epyc-backed instances for storage workloads. The fourth-generation Azure D-series and E-series virtual machines previewed at the Rome launch in August are now generally available. Read more…

By Tiffany Trader

Intel’s New Hyderabad Design Center Targets Exascale Era Technologies

December 3, 2019

Intel's Raja Koduri was in India this week to help launch a new 300,000 square foot design and engineering center in Hyderabad, which will focus on advanced com Read more…

By Tiffany Trader

Using AI to Solve One of the Most Prevailing Problems in CFD

October 17, 2019

How can artificial intelligence (AI) and high-performance computing (HPC) solve mesh generation, one of the most commonly referenced problems in computational engineering? A new study has set out to answer this question and create an industry-first AI-mesh application... Read more…

By James Sharpe

In Memoriam: Steve Tuecke, Globus Co-founder

November 4, 2019

HPCwire is deeply saddened to report that Steve Tuecke, longtime scientist at Argonne National Lab and University of Chicago, has passed away at age 52. Tuecke Read more…

By Tiffany Trader

  • arrow
  • Click Here for More Headlines
  • arrow
Do NOT follow this link or you will be banned from the site!
Share This