Simulating even small biological systems has long proven computationally difficult. Practically speaking, data-driven bioinformatics such as DNA sequence analysis has progressed more rapidly. Development of Anton 1, the ASIC-based supercomputer specifically designed for simulating molecular dynamics by D. E. Shaw Research (DESRES) in 2008, was a major advance. In 2010 DESRES provided an Anton machine Read more…
The National Center for Genome Analysis Support (NCGAS) at Indiana University has expanded its services to help biologists use high-performance computing, NCGAS’ manager announced at a July 23 presentation at the XSEDE13 conference in San Diego.
Thanks to a number of high-performance computing resources in the NSF’s XSEDE network, research by investigators at Cornell University and the University of Illinois at Urbana-Champaign is profoundly changing how regulatory authorities and researchers monitor the major U.S. stock exchanges.
The Pittsburgh Supercomputer Center recently announced a new step in its path to discover new routes to solving memory and I/O problems for data-intensive applications. While they already have a stable of systems that take new approaches to shared memory and have looked to software-based solutions as alternatives, they have now turned to Numascale to dip their toe in the hardware-based…
The Pittsburgh Supercomputing Center celebrates the arrival of its newest supercomputer.
The Weekly Top Five features the five biggest HPC stories of the week, condensed for your reading pleasure. This week, we cover the NC State effort to overcome the memory limitations of multicore chips; the sale of the first-ever commercial quantum computing system; Cray’s first GPU-accelerated machine; speedier machine learning algorithms; and the connection between shrinking budgets and increased reliance on modeling and simulation.
CUDA versus OpenMP for GPUs. What’s a developer to do?
As the Pittsburgh Supercomputing Center prepares to celebrate its 25-year anniversary, three founders provide perspective.
Like the iconic blacklight, PSC’s new shared memory system is a blast from the past.
D.E. Shaw Research loans specialized supercomputer to Pittsburgh Supercomputing Center for biomolecular research, while NIH provides the operating funds; and NCSA climate change models show earth’s temperatures are rising in response to human activity, but it’s not too late to act. We recap those stories and more in our weekly wrapup.