TACC Partners with World Community Grid

By By Aaron Dubrow, Texas Advanced Computing Center

November 12, 2007

Between keystrokes and without blinking an eye, you can help solve the world’s most important problems.

This is the message behind the World Community Grid, the distributed computing network created by IBM, which, since 2004, has been harnessing the power of volunteer computers to find cures for global health problems, understand climate change and discover the basic mechanisms of human health.

“The idea is to tap into this vast computing power and put it together with scientists’ big research ideas to help society and the world by dramatically speeding up their research,” said IBM master inventor and chief scientist for the World Community Grid Viktors Berstis.

Thanks to the World Community Grid’s 330,000 users, more than 120,000 years of computing time has been dedicated to solving grand challenge problems. The World Community Grid — a massive virtual computer composed of 780,000 PCs and counting — represents one of the largest philanthropic research projects ever attempted. The IBM Corp. is funding the project as a charitable program and has donated the hardware, software, technical services and expertise to build and maintain the infrastructure for the World Community Grid.

The Texas Advanced Computing Center (TACC) recently announced its partnership with the World Community Grid and will assist the project by running World Community Grid software on its employee PCs, installing the client on the new Stampede cluster — helping scientists scale their research for the World Community Grid — and allowing other large TACC clusters to run grid computations when there are idle processors.

“TACC deploys world-class high performance computing systems and other advanced computing resources, but does not provide a massive distributed serial computing grid. Therefore, we are pleased to partner with the World Community Grid, one of the leading such projects in the world,” Jay Boisseau, director of TACC, said. “We look forward to working with IBM to explore how researchers can most effectively utilize both TACC advanced systems and the World Community Grid to address problems with deep impact to society as well as science.”

Volunteer computing (a type of “distributed” or “grid” computing) emerged in the 1990s as a way to solve complex problems computationally by connecting large numbers of volunteer PCs over the Internet. Drawing on the successes of SETI@Home — a popular grid computing project begun in 1999 to help search the skies for signs of extraterrestrial life — IBM’s World Community Grid focuses on more terrestrial aims, like drug discovery, climate predictions and bio-engineering.

With volunteer computing, large-scale computational problems are broken up into millions of small data packets and sent to individual participating computers. Home and business PCs, working while they sit idle, process and calculate these data packets and send the results back to a central system. There, the information is double-checked for accuracy and recombined to form a complex solution. This process differs from high performance computing, which processes data using a unified, massively parallel system.

One of the World Community Grid’s most recent projects, “Developing Dengue Drugs — Together,” illustrates the potential of combining grid computing with high performance computing systems, or “supercomputing,” to speed the discovery of small molecules for drug development. This method, called structure-based drug discovery, uses the power of supercomputers to determine which chemical compounds are the most likely to lead to drug discoveries, then uses grid computing to check the results.

Led by Dr. Stan Watowich and his research team at The University of Texas Medical Branch, “Developing Dengue Drugs – Together” aims to find compounds to combat the family of viral diseases called flaviviruses, which include Dengue Fever, West Nile Virus, Hepatitis C, and Yellow Fever. These diseases cause massive loss of life and resources throughout the world, with Dengue Fever infecting 50 to 100 million people each year and West Nile Virus spreading rapidly throughout the United States and Europe. Currently, there are no effective drugs to treat any of these diseases.

Flaviviruses are structurally and functionally similar and depend on a common enzyme, the NS3 protease, for viral replication. Knowing the shape and mechanism of this protease allowed Watowich’s research team to predict a method of disease disruption. But to test the three million potential drug molecules that could act as protease inhibitors was impossible given their on-site capacity.

“To do the drug discovery project in an accurate way would have required tens of thousands of years of computing time. So we talked with TACC and it became clear that a distributed computing approach would be very valuable,” Watowich said. “We decided to take advantage of what IBM had established and approached them about running our project on the World Community Grid.” Using the free resources of the World Community Grid, over 60,000 years worth of computing can be completed each year.

Watowich’s team used the Grid to do most of the computational heavy lifting, but performed pre- and post-processing, as well as algorithm and database testing, at TACC. “We’ve used TACC [systems] extensively for the initial development work, testing the programs on Lonestar and doing a lot of pre-processing to get the databases in the right format,” Watowich said.

In Phase 2 of the Dengue discovery program, TACC will serve as the “mothership” for preparing, storing and processing all World Community Grid calculations. With the combined resources of TACC and the World Community Grid, the future of this type of approach is essentially limitless, Watowich said. “Any disease, such as Alzheimer’s, influenza, or asthma, that has a protein target for the manifestation of the disease can be targeted with this approach.”

The World Community Grid has already helped researchers complete several studies, including a comparison of genomes and the development of tools for early cancer diagnostics. Presently, the Grid has four active projects through partnerships with non-profit, governmental, and academic institutions, searching for AIDS and Dengue drugs, and studying African climate change and human protein folding. The discoveries facilitated by the Grid are made available to the public to help the global research community.

Despite the World Community Grid’s achievements, there is still tremendous room for growth, according to Berstis. “One challenge is getting scientists to come up with really big projects to help the world and humanity,” Berstis said. “The other part of the challenge is getting the information out to all your friends and relatives and getting them to sign up.”

With the number of PCs in the world approaching one billion, the World Community Grid has untold potential, leading many researchers to believe the next big breakthrough might be achieved with the help of your home or work computer. “It’s doing something philanthropic without paying any money. How often can you do that?” Berstis said. “Everybody else asks for money, or time. Here’s something you can do to contribute to humanity and it’s effortless.”

Subscribe to HPCwire's Weekly Update!

Be the most informed person in the room! Stay ahead of the tech trends with industry updates delivered to you every week!

Nvidia Showcases Work with Quantum Centers at ISC24

May 13, 2024

With quantum computing surging in Europe, Nvidia took advantage of ISC24 to showcase its efforts working with quantum development centers. Currently, Nvidia GPUs are dominant inside classical systems used for quantum sim Read more…

ISC24: Hyperion Research Predicts HPC Market Rebound after Flat 2023

May 13, 2024

First, the top line: the overall HPC market was flat in 2023 at roughly $37 billion, bogged down by supply chain issues and slowed acceptance of some larger systems (e.g. exascale), according to Hyperion Research’s ann Read more…

Top 500: Aurora Breaks into Exascale, but Can’t Get to the Frontier of HPC

May 13, 2024

The 63rd installment of the TOP500 list is available today in coordination with the kickoff of ISC 2024 in Hamburg, Germany. Once again, the Frontier system at Oak Ridge National Laboratory in Tennessee, USA, retains its Read more…

Harvard/Google Use AI to Help Produce Astonishing 3D Map of Brain Tissue

May 10, 2024

Although LLMs are getting all the notice lately, AI techniques of many varieties are being infused throughout science. For example, Harvard researchers, Google, and colleagues published a 3D map in Science this week that Read more…

ISC Preview: Focus Will Be on Top500 and HPC Diversity 

May 9, 2024

Last year's Supercomputing 2023 in November had record attendance, but the direction of high-performance computing was a hot topic on the floor. Expect more of that at the upcoming ISC High Performance 2024, which is hap Read more…

Processor Security: Taking the Wong Path

May 9, 2024

More research at UC San Diego revealed yet another side-channel attack on x86_64 processors. The research identified a new vulnerability that allows precise control of conditional branch prediction in modern processors.� Read more…

ISC24: Hyperion Research Predicts HPC Market Rebound after Flat 2023

May 13, 2024

First, the top line: the overall HPC market was flat in 2023 at roughly $37 billion, bogged down by supply chain issues and slowed acceptance of some larger sys Read more…

Top 500: Aurora Breaks into Exascale, but Can’t Get to the Frontier of HPC

May 13, 2024

The 63rd installment of the TOP500 list is available today in coordination with the kickoff of ISC 2024 in Hamburg, Germany. Once again, the Frontier system at Read more…

ISC Preview: Focus Will Be on Top500 and HPC Diversity 

May 9, 2024

Last year's Supercomputing 2023 in November had record attendance, but the direction of high-performance computing was a hot topic on the floor. Expect more of Read more…

Illinois Considers $20 Billion Quantum Manhattan Project Says Report

May 7, 2024

There are multiple reports that Illinois governor Jay Robert Pritzker is considering a $20 billion Quantum Manhattan-like project for the Chicago area. Accordin Read more…

The NASA Black Hole Plunge

May 7, 2024

We have all thought about it. No one has done it, but now, thanks to HPC, we see what it looks like. Hold on to your feet because NASA has released videos of wh Read more…

How Nvidia Could Use $700M Run.ai Acquisition for AI Consumption

May 6, 2024

Nvidia is touching $2 trillion in market cap purely on the brute force of its GPU sales, and there's room for the company to grow with software. The company hop Read more…

Hyperion To Provide a Peek at Storage, File System Usage with Global Site Survey

May 3, 2024

Curious how the market for distributed file systems, interconnects, and high-end storage is playing out in 2024? Then you might be interested in the market anal Read more…

Qubit Watch: Intel Process, IBM’s Heron, APS March Meeting, PsiQuantum Platform, QED-C on Logistics, FS Comparison

May 1, 2024

Intel has long argued that leveraging its semiconductor manufacturing prowess and use of quantum dot qubits will help Intel emerge as a leader in the race to de Read more…

Nvidia H100: Are 550,000 GPUs Enough for This Year?

August 17, 2023

The GPU Squeeze continues to place a premium on Nvidia H100 GPUs. In a recent Financial Times article, Nvidia reports that it expects to ship 550,000 of its lat Read more…

Synopsys Eats Ansys: Does HPC Get Indigestion?

February 8, 2024

Recently, it was announced that Synopsys is buying HPC tool developer Ansys. Started in Pittsburgh, Pa., in 1970 as Swanson Analysis Systems, Inc. (SASI) by John Swanson (and eventually renamed), Ansys serves the CAE (Computer Aided Engineering)/multiphysics engineering simulation market. Read more…

Intel’s Server and PC Chip Development Will Blur After 2025

January 15, 2024

Intel's dealing with much more than chip rivals breathing down its neck; it is simultaneously integrating a bevy of new technologies such as chiplets, artificia Read more…

Comparing NVIDIA A100 and NVIDIA L40S: Which GPU is Ideal for AI and Graphics-Intensive Workloads?

October 30, 2023

With long lead times for the NVIDIA H100 and A100 GPUs, many organizations are looking at the new NVIDIA L40S GPU, which it’s a new GPU optimized for AI and g Read more…

Choosing the Right GPU for LLM Inference and Training

December 11, 2023

Accelerating the training and inference processes of deep learning models is crucial for unleashing their true potential and NVIDIA GPUs have emerged as a game- Read more…

Shutterstock 1606064203

Meta’s Zuckerberg Puts Its AI Future in the Hands of 600,000 GPUs

January 25, 2024

In under two minutes, Meta's CEO, Mark Zuckerberg, laid out the company's AI plans, which included a plan to build an artificial intelligence system with the eq Read more…

AMD MI3000A

How AMD May Get Across the CUDA Moat

October 5, 2023

When discussing GenAI, the term "GPU" almost always enters the conversation and the topic often moves toward performance and access. Interestingly, the word "GPU" is assumed to mean "Nvidia" products. (As an aside, the popular Nvidia hardware used in GenAI are not technically... Read more…

Nvidia’s New Blackwell GPU Can Train AI Models with Trillions of Parameters

March 18, 2024

Nvidia's latest and fastest GPU, codenamed Blackwell, is here and will underpin the company's AI plans this year. The chip offers performance improvements from Read more…

Leading Solution Providers

Contributors

Shutterstock 1285747942

AMD’s Horsepower-packed MI300X GPU Beats Nvidia’s Upcoming H200

December 7, 2023

AMD and Nvidia are locked in an AI performance battle – much like the gaming GPU performance clash the companies have waged for decades. AMD has claimed it Read more…

Eyes on the Quantum Prize – D-Wave Says its Time is Now

January 30, 2024

Early quantum computing pioneer D-Wave again asserted – that at least for D-Wave – the commercial quantum era has begun. Speaking at its first in-person Ana Read more…

The GenAI Datacenter Squeeze Is Here

February 1, 2024

The immediate effect of the GenAI GPU Squeeze was to reduce availability, either direct purchase or cloud access, increase cost, and push demand through the roof. A secondary issue has been developing over the last several years. Even though your organization secured several racks... Read more…

The NASA Black Hole Plunge

May 7, 2024

We have all thought about it. No one has done it, but now, thanks to HPC, we see what it looks like. Hold on to your feet because NASA has released videos of wh Read more…

Intel Plans Falcon Shores 2 GPU Supercomputing Chip for 2026  

August 8, 2023

Intel is planning to onboard a new version of the Falcon Shores chip in 2026, which is code-named Falcon Shores 2. The new product was announced by CEO Pat Gel Read more…

GenAI Having Major Impact on Data Culture, Survey Says

February 21, 2024

While 2023 was the year of GenAI, the adoption rates for GenAI did not match expectations. Most organizations are continuing to invest in GenAI but are yet to Read more…

Q&A with Nvidia’s Chief of DGX Systems on the DGX-GB200 Rack-scale System

March 27, 2024

Pictures of Nvidia's new flagship mega-server, the DGX GB200, on the GTC show floor got favorable reactions on social media for the sheer amount of computing po Read more…

A Big Memory Nvidia GH200 Next to Your Desk: Closer Than You Think

February 22, 2024

Students of the microprocessor may recall that the original 8086/8088 processors did not have floating point units. The motherboard often had an extra socket fo Read more…

  • arrow
  • Click Here for More Headlines
  • arrow
HPCwire