Modernizing HPC Cluster Monitoring

By Nicole Hemsoth

September 18, 2014

If you thought cluster management tools were too plentiful to count, they have nothing on system monitoring. From open source to commercial packages, the list goes on. The problem, however, is that there are too few tools that bring together a unified view of what’s happening on large clusters in a comprehensive way—from gathering data from the scheduler, the compute, and the applications themselves.

Although there are no hard numbers on its use, Ganglia appears to be the clear leader in terms of cluster monitoring. According to X-ISS President and CEO, around 90% of HPC shops of all sizes are using the framework, with another small subset using other mature HPC monitoring tools like Supermon. His company has seen its share of large and mid-sized HPC clusters in their decade-plus run in the systems business, but what they haven’t been able to find until more recently are ways to get a “single pane of glass” view into how the clusters are operating holistically. In other words, there has been no capability to take the strengths of Ganglia and similar tooling and mesh that capability with a wealth of other cluster monitoring and management data.

To be fair, modernization and sophistication of tools like Ganglia has been happening at a quick clip, especially since the “wider world” is catching on to the value of these tools. Not to single out Ganglia (since there are other apt examples), but its usage is surging beyond the halls of HPC. Cloud service providers, hyperscale datacenter operators, and a new crop of big data types are picking it out of a crowd. (On this note, for the love of god, do not type “Ganglia growth” into Google. It is not what you’re looking for. Ew.)

While the existing cadre of monitoring tools are perfect for understanding the nuts and bolts of what’s happening with a cluster from a hardware and general performance perspective, Khosla says that they are unable to provide a more comprehensive view into other practical metrics, including those around broader application and project performance, job cost, and historical trends. Even when coupled with the analytics tools found in all of the popular schedulers, including LSF, Torque, PBS and others, users are left with a scattered field of results that are technical to chew through quickly and too distributed to mesh without significant effort.

This problem is compounded by centers that have distributed HPC datacenters. For example, in the oil and gas industry, which was the impetus for X-ISS to build a broader view, clusters are scattered in different geographical areas, often with varied scheduler and system environments. Pulling together a single-pane view of these systems and their efficiency on an operational, application, cost, and performance level is not a simple task and involves that troublesome meshing of different tools.

For these users, pushing together the data is not the only practical challenge. “HPC users are by nature wary about anything that gets put into their stack,” says Khosla. “This means they aren’t going to want to add more monitoring or other tools when they’ve been using something like Ganglia and their regular scheduler tools.” So if this is the case—and the need for more comprehensive, meshed monitoring is clear—what are users to do?

The solution is to hook into existing monitoring and other tools and their collectors and feed all of that data into one place. In the case of X-ISS and its cluster analytics, the data is fed via a secure tunnel into their own servers where it is processed for a real-time or historical/trends view for analysis via a web portal. This way, there’s no need for users to add more weight to their monitoring operations or to create a performance drag on the systems with the addition of yet another tool to manage.

XISS_internal

The analytics and monitoring tool X-ISS cooked up, called DecisionHPC, hooks into most of the common schedulers used in HPC environments (Torque, PBS Pro, LSF, CJM, and Grid Engine) and can snap in with Ganglia and other custom monitoring tools.

Users can access the web interface to view several aspects about the overall operation of the cluster, then refine the analysis to look at things from new vantage points, including cost analysis, performance details to help gauge and refine what is failing or working well, and of course the know-how to adjust to overcome or complement the findings.

An example of the dashboard is below, but what’s notable here, says Kholsa, is how it offers a real-time view of what’s happening with the cluster(s) at any given moment. It’s possible to monitor clusters in different geographic locations, even those running different schedulers, monitoring agents, with variable hardware configuration—another unique element, he argues.

XISS_internal2

He agrees that it is indeed possible to do all of these things with existing tools, but they’re all separate and can only provide part of the insight. For instance, he says, “what’s available in Linux tools are system-level metrics, but most HPC users don’t make use of those tools because you have to go to the node level. Other tools like Ganglia give you a more manageable view but it’s technical and has to be done piece by piece, making it hard to get a global view.” He added that while it’s possible to see what’s happening with the CPU, memory, I/O, and other elements, “it can’t answer questions like how busy a cluster was application-wise from month to month, for instance.”As it stands now, many are just writing their own tools for reporting, which also doesn’t offer the level of ease and insight needed.

“Today we have our largest customer with about 15k objects we’re monitoring and around 20-30 metrics every 5 minutes—and at any moment they can pull up a live view of those 7000. The analytics tools in schedulers can’t report live like this. Part of the goal is application profiling and benchmarking also but also, CPU, memory, network throughput alone are valuable.”

Subscribe to HPCwire's Weekly Update!

Be the most informed person in the room! Stay ahead of the tech trends with industry updates delivered to you every week!

Google Announces Sixth-generation AI Chip, a TPU Called Trillium

May 17, 2024

On Tuesday May 14th, Google announced its sixth-generation TPU (tensor processing unit) called Trillium.  The chip, essentially a TPU v6, is the company's latest weapon in the AI battle with GPU maker Nvidia and clou Read more…

ISC 2024 Student Cluster Competition

May 16, 2024

The 2024 ISC 2024 competition welcomed 19 virtual (remote) and eight in-person teams. The in-person teams participated in the conference venue and, while the virtual teams competed using the Bridges-2 supercomputers at t Read more…

Grace Hopper Gets Busy with Science 

May 16, 2024

Nvidia’s new Grace Hopper Superchip (GH200) processor has landed in nine new worldwide systems. The GH200 is a recently announced chip from Nvidia that eliminates the PCI bus from the CPU/GPU communications pathway.  Read more…

Europe’s Race towards Quantum-HPC Integration and Quantum Advantage

May 16, 2024

What an interesting panel, Quantum Advantage — Where are We and What is Needed? While the panelists looked slightly weary — their’s was, after all, one of the last panels at ISC 2024 — the discussion was fascinat Read more…

The Future of AI in Science

May 15, 2024

AI is one of the most transformative and valuable scientific tools ever developed. By harnessing vast amounts of data and computational power, AI systems can uncover patterns, generate insights, and make predictions that Read more…

Some Reasons Why Aurora Didn’t Take First Place in the Top500 List

May 15, 2024

The makers of the Aurora supercomputer, which is housed at the Argonne National Laboratory, gave some reasons why the system didn't make the top spot on the Top500 list of the fastest supercomputers in the world. At s Read more…

Google Announces Sixth-generation AI Chip, a TPU Called Trillium

May 17, 2024

On Tuesday May 14th, Google announced its sixth-generation TPU (tensor processing unit) called Trillium.  The chip, essentially a TPU v6, is the company's l Read more…

Europe’s Race towards Quantum-HPC Integration and Quantum Advantage

May 16, 2024

What an interesting panel, Quantum Advantage — Where are We and What is Needed? While the panelists looked slightly weary — their’s was, after all, one of Read more…

The Future of AI in Science

May 15, 2024

AI is one of the most transformative and valuable scientific tools ever developed. By harnessing vast amounts of data and computational power, AI systems can un Read more…

Some Reasons Why Aurora Didn’t Take First Place in the Top500 List

May 15, 2024

The makers of the Aurora supercomputer, which is housed at the Argonne National Laboratory, gave some reasons why the system didn't make the top spot on the Top Read more…

ISC 2024 Keynote: High-precision Computing Will Be a Foundation for AI Models

May 15, 2024

Some scientific computing applications cannot sacrifice accuracy and will always require high-precision computing. Therefore, conventional high-performance c Read more…

Shutterstock 493860193

Linux Foundation Announces the Launch of the High-Performance Software Foundation

May 14, 2024

The Linux Foundation, the nonprofit organization enabling mass innovation through open source, is excited to announce the launch of the High-Performance Softw Read more…

ISC 2024: Hyperion Research Predicts HPC Market Rebound after Flat 2023

May 13, 2024

First, the top line: the overall HPC market was flat in 2023 at roughly $37 billion, bogged down by supply chain issues and slowed acceptance of some larger sys Read more…

Top 500: Aurora Breaks into Exascale, but Can’t Get to the Frontier of HPC

May 13, 2024

The 63rd installment of the TOP500 list is available today in coordination with the kickoff of ISC 2024 in Hamburg, Germany. Once again, the Frontier system at Read more…

Synopsys Eats Ansys: Does HPC Get Indigestion?

February 8, 2024

Recently, it was announced that Synopsys is buying HPC tool developer Ansys. Started in Pittsburgh, Pa., in 1970 as Swanson Analysis Systems, Inc. (SASI) by John Swanson (and eventually renamed), Ansys serves the CAE (Computer Aided Engineering)/multiphysics engineering simulation market. Read more…

Nvidia H100: Are 550,000 GPUs Enough for This Year?

August 17, 2023

The GPU Squeeze continues to place a premium on Nvidia H100 GPUs. In a recent Financial Times article, Nvidia reports that it expects to ship 550,000 of its lat Read more…

Comparing NVIDIA A100 and NVIDIA L40S: Which GPU is Ideal for AI and Graphics-Intensive Workloads?

October 30, 2023

With long lead times for the NVIDIA H100 and A100 GPUs, many organizations are looking at the new NVIDIA L40S GPU, which it’s a new GPU optimized for AI and g Read more…

Choosing the Right GPU for LLM Inference and Training

December 11, 2023

Accelerating the training and inference processes of deep learning models is crucial for unleashing their true potential and NVIDIA GPUs have emerged as a game- Read more…

Shutterstock 1606064203

Meta’s Zuckerberg Puts Its AI Future in the Hands of 600,000 GPUs

January 25, 2024

In under two minutes, Meta's CEO, Mark Zuckerberg, laid out the company's AI plans, which included a plan to build an artificial intelligence system with the eq Read more…

AMD MI3000A

How AMD May Get Across the CUDA Moat

October 5, 2023

When discussing GenAI, the term "GPU" almost always enters the conversation and the topic often moves toward performance and access. Interestingly, the word "GPU" is assumed to mean "Nvidia" products. (As an aside, the popular Nvidia hardware used in GenAI are not technically... Read more…

Nvidia’s New Blackwell GPU Can Train AI Models with Trillions of Parameters

March 18, 2024

Nvidia's latest and fastest GPU, codenamed Blackwell, is here and will underpin the company's AI plans this year. The chip offers performance improvements from Read more…

Some Reasons Why Aurora Didn’t Take First Place in the Top500 List

May 15, 2024

The makers of the Aurora supercomputer, which is housed at the Argonne National Laboratory, gave some reasons why the system didn't make the top spot on the Top Read more…

Leading Solution Providers

Contributors

Shutterstock 1285747942

AMD’s Horsepower-packed MI300X GPU Beats Nvidia’s Upcoming H200

December 7, 2023

AMD and Nvidia are locked in an AI performance battle – much like the gaming GPU performance clash the companies have waged for decades. AMD has claimed it Read more…

Eyes on the Quantum Prize – D-Wave Says its Time is Now

January 30, 2024

Early quantum computing pioneer D-Wave again asserted – that at least for D-Wave – the commercial quantum era has begun. Speaking at its first in-person Ana Read more…

The GenAI Datacenter Squeeze Is Here

February 1, 2024

The immediate effect of the GenAI GPU Squeeze was to reduce availability, either direct purchase or cloud access, increase cost, and push demand through the roof. A secondary issue has been developing over the last several years. Even though your organization secured several racks... Read more…

Intel Plans Falcon Shores 2 GPU Supercomputing Chip for 2026  

August 8, 2023

Intel is planning to onboard a new version of the Falcon Shores chip in 2026, which is code-named Falcon Shores 2. The new product was announced by CEO Pat Gel Read more…

The NASA Black Hole Plunge

May 7, 2024

We have all thought about it. No one has done it, but now, thanks to HPC, we see what it looks like. Hold on to your feet because NASA has released videos of wh Read more…

GenAI Having Major Impact on Data Culture, Survey Says

February 21, 2024

While 2023 was the year of GenAI, the adoption rates for GenAI did not match expectations. Most organizations are continuing to invest in GenAI but are yet to Read more…

How the Chip Industry is Helping a Battery Company

May 8, 2024

Chip companies, once seen as engineering pure plays, are now at the center of geopolitical intrigue. Chip manufacturing firms, especially TSMC and Intel, have b Read more…

Q&A with Nvidia’s Chief of DGX Systems on the DGX-GB200 Rack-scale System

March 27, 2024

Pictures of Nvidia's new flagship mega-server, the DGX GB200, on the GTC show floor got favorable reactions on social media for the sheer amount of computing po Read more…

  • arrow
  • Click Here for More Headlines
  • arrow
HPCwire