Saddling Phi for TACC’s Stampede

By Nicole Hemsoth

May 17, 2013

The Xeon Phi coprocessor might be the new kid on the high performance block, but among all first-rate kickers of Intel’s new tires, the Texas Advanced Computing Center (TACC) got the first real jab with its top ten Stampede system.

Even before the completion of the 6,400-node Dell-built hybrid, the team was able to work with the Knight’s Ferry early platform development, eventually plugging in Knight’s Corner parts last October. Since then, they’ve pushed their 6,880 Phi coprocessors to new programming and performance limits against the flanks of both their Sandy Bridge and NVIDIA GPU capabilities.

One of the practical challenges of experimenting with mixed architectures at a major research center is that there are many users with a broad range of applications. Many of the users are scientists—but not of the computing variety. When Stampede kicked up its first dust at the beginning of the year, it supported more than 600 scientific and engineering projects from over 1,000 researchers. This meant a switch to a new system–and a new learning curve, even if it was offset by some x86 comfort.

On the Phi front, the porting of so many users’ code was relatively simple, which was beneficial in terms of getting up and running, but there’s far more to the story past the pure port. According to TACC Director of Scientific Applications, Dr. Karl Schulz, getting code clicked over to Phi is the relatively easy part (unless they’re reliant on a large number of third party libraries). It’s getting the code optimized that’s the real challenge.

To put this in perspective, with 61 active cores, each supporting four threads, users are looking at 240 threads that the kernel has to scale across. Schulz says what they have to keep reminding users is that if they have a program, say an OpenMP application, and it doesn’t scale well on Sandy Bridge, it’s not going to just miraculously scale on Phi. It may sound simple, but optimization is where the hidden difficulty (ultimate value) lies. Just as with other architectures and GPUs, the real performance can only be met through the same optimization process that supports accelerator performance.

“You can port easily, but the things you do in CUDA to vectorize your code still have to be done for Phi,” he explained. “if you don’t vectorize on MIC, you’re not going to get the insane performance you were hoping for. You have to have well-vectorized code, you still have to think about affinity and processor placement, and you still have to have a kernel that supports high degrees of parallelism.”

Following the emphasis on optimization, Schulz and team came up with a simple, but surprising finding. When users took the time to optimize for Phi thoroughly, they regularly found that they were getting far better performance out of the Sandy Bridge side—meaning that there has been some floating point scrap left on the table that the MIC optimization effort sniffed out.

On the “easy” part of the port-to-Phi equation, Schulz notes that the hype around the ease of moving code to the coprocessor is hard to argue with. “You can just fundamentally compile Fortran code if you want…So in the case of full native offload, for instance, assuming you don’t have a lot of third party library requirements, you take your code, compile the whole thing, and run it on Phi—even completely ignoring Sandy Bridge (in our case) or Ivy Bridge.” He points to a case where his team took a million-line Fortran code and demonstrated this. In short, he says that if code already has reasonably good threaded scaling performance, users can expect reasonably good performance.

There are some other unique programming tales that are being spun on Phi as well. He says the CUDA folks at TACC that have solid experience with GPUs can’t port their code to CUDA directly, of course, but they have already gone through their code to target the parts that GPUs kill on, and these also tend to do well on Phi. For these users, all they need to do is take their CUDA code, write it back to C (even though chances are it’s already in C anyway) and they’re ready to roll with Phi pretty quickly with, again, what Schulz says is “reasonably good performance.”

The most interesting element of programming for Phi that they’re probing at TACC is a different model altogether—it’s not offload or native. Members of his team are essentially working on doing MPI between the host and the MICs. So in theory, if there was an app with the flexibility to support domains that aren’t of equal size (and usually there’s the assumption of equal capability), users spend a lot of time trying to decompose their geometries into equal domains, then farm those out to all the processors. But in the scenario where someone wants to run a part on the Xeon and part on the Phi, the two obviously won’t run at the same speeds. Not just that, the serial portions are going to run much slower on Phi but the things that are vectorized will be be faster. The point is, for those who have the capability to do domain decomposition in a fairly general way, there will be more ease in taking advantage of all the performance possibilities.

With many processors and programming a port away, more experienced users have been able to run micro-benchmarks on their code. While it’s too early give a concrete reference to compare approaches, Schulz says that there are some apps that are a big win for Phi, some where it’s modest (if at all) and in other cases, there are rather dramatic slowdowns—the same of which can be said for any accelerator.

On that note, Schulz says that the need for hybrid programming now is great—but he expects it to be a necessity going forward, especially in the era he predicts will see systems much like TACC’s new beauty that require teaching some old code new tricks.

Schulz did a rather remarkable presentation on the finer points of the TACC system–from the file system to unique cabling with his wife’s hairbands-this is worth a look.

Subscribe to HPCwire's Weekly Update!

Be the most informed person in the room! Stay ahead of the tech trends with industry updates delivered to you every week!

Google Announces Sixth-generation AI Chip, a TPU Called Trillium

May 17, 2024

On Tuesday May 14th, Google announced its sixth-generation TPU (tensor processing unit) called Trillium.  The chip, essentially a TPU v6, is the company's latest weapon in the AI battle with GPU maker Nvidia and clou Read more…

ISC 2024 Student Cluster Competition

May 16, 2024

The 2024 ISC 2024 competition welcomed 19 virtual (remote) and eight in-person teams. The in-person teams participated in the conference venue and, while the virtual teams competed using the Bridges-2 supercomputers at t Read more…

Grace Hopper Gets Busy with Science 

May 16, 2024

Nvidia’s new Grace Hopper Superchip (GH200) processor has landed in nine new worldwide systems. The GH200 is a recently announced chip from Nvidia that eliminates the PCI bus from the CPU/GPU communications pathway.  Read more…

Europe’s Race towards Quantum-HPC Integration and Quantum Advantage

May 16, 2024

What an interesting panel, Quantum Advantage — Where are We and What is Needed? While the panelists looked slightly weary — their’s was, after all, one of the last panels at ISC 2024 — the discussion was fascinat Read more…

The Future of AI in Science

May 15, 2024

AI is one of the most transformative and valuable scientific tools ever developed. By harnessing vast amounts of data and computational power, AI systems can uncover patterns, generate insights, and make predictions that Read more…

Some Reasons Why Aurora Didn’t Take First Place in the Top500 List

May 15, 2024

The makers of the Aurora supercomputer, which is housed at the Argonne National Laboratory, gave some reasons why the system didn't make the top spot on the Top500 list of the fastest supercomputers in the world. At s Read more…

Google Announces Sixth-generation AI Chip, a TPU Called Trillium

May 17, 2024

On Tuesday May 14th, Google announced its sixth-generation TPU (tensor processing unit) called Trillium.  The chip, essentially a TPU v6, is the company's l Read more…

Europe’s Race towards Quantum-HPC Integration and Quantum Advantage

May 16, 2024

What an interesting panel, Quantum Advantage — Where are We and What is Needed? While the panelists looked slightly weary — their’s was, after all, one of Read more…

The Future of AI in Science

May 15, 2024

AI is one of the most transformative and valuable scientific tools ever developed. By harnessing vast amounts of data and computational power, AI systems can un Read more…

Some Reasons Why Aurora Didn’t Take First Place in the Top500 List

May 15, 2024

The makers of the Aurora supercomputer, which is housed at the Argonne National Laboratory, gave some reasons why the system didn't make the top spot on the Top Read more…

ISC 2024 Keynote: High-precision Computing Will Be a Foundation for AI Models

May 15, 2024

Some scientific computing applications cannot sacrifice accuracy and will always require high-precision computing. Therefore, conventional high-performance c Read more…

Shutterstock 493860193

Linux Foundation Announces the Launch of the High-Performance Software Foundation

May 14, 2024

The Linux Foundation, the nonprofit organization enabling mass innovation through open source, is excited to announce the launch of the High-Performance Softw Read more…

ISC 2024: Hyperion Research Predicts HPC Market Rebound after Flat 2023

May 13, 2024

First, the top line: the overall HPC market was flat in 2023 at roughly $37 billion, bogged down by supply chain issues and slowed acceptance of some larger sys Read more…

Top 500: Aurora Breaks into Exascale, but Can’t Get to the Frontier of HPC

May 13, 2024

The 63rd installment of the TOP500 list is available today in coordination with the kickoff of ISC 2024 in Hamburg, Germany. Once again, the Frontier system at Read more…

Synopsys Eats Ansys: Does HPC Get Indigestion?

February 8, 2024

Recently, it was announced that Synopsys is buying HPC tool developer Ansys. Started in Pittsburgh, Pa., in 1970 as Swanson Analysis Systems, Inc. (SASI) by John Swanson (and eventually renamed), Ansys serves the CAE (Computer Aided Engineering)/multiphysics engineering simulation market. Read more…

Nvidia H100: Are 550,000 GPUs Enough for This Year?

August 17, 2023

The GPU Squeeze continues to place a premium on Nvidia H100 GPUs. In a recent Financial Times article, Nvidia reports that it expects to ship 550,000 of its lat Read more…

Comparing NVIDIA A100 and NVIDIA L40S: Which GPU is Ideal for AI and Graphics-Intensive Workloads?

October 30, 2023

With long lead times for the NVIDIA H100 and A100 GPUs, many organizations are looking at the new NVIDIA L40S GPU, which it’s a new GPU optimized for AI and g Read more…

Choosing the Right GPU for LLM Inference and Training

December 11, 2023

Accelerating the training and inference processes of deep learning models is crucial for unleashing their true potential and NVIDIA GPUs have emerged as a game- Read more…

Shutterstock 1606064203

Meta’s Zuckerberg Puts Its AI Future in the Hands of 600,000 GPUs

January 25, 2024

In under two minutes, Meta's CEO, Mark Zuckerberg, laid out the company's AI plans, which included a plan to build an artificial intelligence system with the eq Read more…

AMD MI3000A

How AMD May Get Across the CUDA Moat

October 5, 2023

When discussing GenAI, the term "GPU" almost always enters the conversation and the topic often moves toward performance and access. Interestingly, the word "GPU" is assumed to mean "Nvidia" products. (As an aside, the popular Nvidia hardware used in GenAI are not technically... Read more…

Nvidia’s New Blackwell GPU Can Train AI Models with Trillions of Parameters

March 18, 2024

Nvidia's latest and fastest GPU, codenamed Blackwell, is here and will underpin the company's AI plans this year. The chip offers performance improvements from Read more…

Some Reasons Why Aurora Didn’t Take First Place in the Top500 List

May 15, 2024

The makers of the Aurora supercomputer, which is housed at the Argonne National Laboratory, gave some reasons why the system didn't make the top spot on the Top Read more…

Leading Solution Providers

Contributors

Shutterstock 1285747942

AMD’s Horsepower-packed MI300X GPU Beats Nvidia’s Upcoming H200

December 7, 2023

AMD and Nvidia are locked in an AI performance battle – much like the gaming GPU performance clash the companies have waged for decades. AMD has claimed it Read more…

Eyes on the Quantum Prize – D-Wave Says its Time is Now

January 30, 2024

Early quantum computing pioneer D-Wave again asserted – that at least for D-Wave – the commercial quantum era has begun. Speaking at its first in-person Ana Read more…

The GenAI Datacenter Squeeze Is Here

February 1, 2024

The immediate effect of the GenAI GPU Squeeze was to reduce availability, either direct purchase or cloud access, increase cost, and push demand through the roof. A secondary issue has been developing over the last several years. Even though your organization secured several racks... Read more…

Intel Plans Falcon Shores 2 GPU Supercomputing Chip for 2026  

August 8, 2023

Intel is planning to onboard a new version of the Falcon Shores chip in 2026, which is code-named Falcon Shores 2. The new product was announced by CEO Pat Gel Read more…

The NASA Black Hole Plunge

May 7, 2024

We have all thought about it. No one has done it, but now, thanks to HPC, we see what it looks like. Hold on to your feet because NASA has released videos of wh Read more…

GenAI Having Major Impact on Data Culture, Survey Says

February 21, 2024

While 2023 was the year of GenAI, the adoption rates for GenAI did not match expectations. Most organizations are continuing to invest in GenAI but are yet to Read more…

How the Chip Industry is Helping a Battery Company

May 8, 2024

Chip companies, once seen as engineering pure plays, are now at the center of geopolitical intrigue. Chip manufacturing firms, especially TSMC and Intel, have b Read more…

Q&A with Nvidia’s Chief of DGX Systems on the DGX-GB200 Rack-scale System

March 27, 2024

Pictures of Nvidia's new flagship mega-server, the DGX GB200, on the GTC show floor got favorable reactions on social media for the sheer amount of computing po Read more…

  • arrow
  • Click Here for More Headlines
  • arrow
HPCwire